Motif IL_09699.1 Version IL_09699.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4GMA_007 | 4GMA | 0.2607 | 0 | Z | C | 113 | A | 114 | C | 115 | * | G | 128 | G | 129 | A | 130 | A | 131 | G | 132 | cWW | cWW | ntSH | |||
| 2 | IL_4GXY_009 | 4GXY | 0.0000 | 0 | Major groove minor groove platform with extra cWW | A | C | 105 | A | 106 | C | 107 | * | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | cWW | ntHS | cWW | ntSH | |
| 3 | IL_5UNE_002 | 5UNE | 0.5721 | 1 | Isolated basepair with bulged bases | A+B | U | 10 | G | 11 | G | 12 | * | C | 33 | G | 34 | G | 35 | A | 37 | A | 38 | cWW | ntHS | cWW | ||
| 4 | IL_4V5O_144 | 4V5O | 0.8361 | 2 | Minor groove platform with extra cWW (H) | BA | U | 1248 | G | 1249 | G | 1250 | * | U | 1401 | C | 1402 | G | 1404 | U | 1405 | A | 1407 | cWW | ncWB | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAC*GGAAG | 2 |
| UGG*CGGAAA | 1 |
| UGG*UCUGUGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GAA | 2 |
| G*GGAA | 1 |
| G*CUGUG | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Major groove minor groove platform with extra cWW (1)
- Minor groove platform with extra cWW (H) (1)
- Isolated basepair with bulged bases (1)
- Basepair signature
- cWW-R-R-tHS-cWW
- Heat map statistics
- Min 0.26 | Avg 0.51 | Max 0.87
Coloring options: