IL_4GXY_009

3D structure

PDB id

4GXY (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA structure

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAC*GGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_80823.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4GXY|1|A|C|105
4GXY|1|A|A|106
4GXY|1|A|C|107
*
4GXY|1|A|G|122
4GXY|1|A|G|123
4GXY|1|A|A|124
4GXY|1|A|A|125
4GXY|1|A|G|126

Current chains

Chain A

Adenosylcobalamin riboswitch

Nearby chains