Motif IL_09732.3 Version IL_09732.3 of this group appears in releases 3.15 to 3.26
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5BTP_005 | 5BTP | 0.1363 | 6 | B | RNA (62-MER) | C | 15 | U | 16 | G | 17 | A | 18 | G | 25 | * | C | 38 | A | 39 | U | 40 | G | 41 | cWW | cwW | cWW | |
| 2 | IL_4ZNP_003 | 4ZNP | 0.0000 | 7 | A | pfI Riboswitch | C | 12 | U | 13 | G | 14 | G | 15 | G | 23 | * | C | 34 | G | 35 | U | 36 | G | 37 | cWW | cwW | cWW | |
| 3 | IL_5J7L_353 | 5J7L | 0.7540 | 0 | Multiple bulged bases with non-canonical cWW | DA | LSU rRNA | C | 2870 | U | 2871 | A | 2872 | A | 2873 | C | 2874 | * | G | 2843 | G | 2844 | U | 2845 | G | 2846 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGACGGAACG*CAUG | 1 |
| CUGGCGGAUUAG*CGUG | 1 |
| CUAAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGACGGAAC*AU | 1 |
| UGGCGGAUUA*GU | 1 |
| UAA*GU | 1 |
Release history
| Release | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Multiple bulged bases with non-canonical cWW (1)
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Heat map statistics
- Min 0.14 | Avg 0.37 | Max 0.76
Coloring options: