Motif IL_09732.6 Version IL_09732.6 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_400 | 4V88 | 0.8738 | 0 | A6 | SSU rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | cWW | |
| 2 | IL_4ZNP_003 | 4ZNP | 0.0000 | 9 | A | ZMP/ZTP riboswitch | C | 34 | G | 35 | U | 36 | G | 37 | * | C | 12 | U | 13 | G | 23 | cWW | cWw | cWW |
| 3 | IL_5BTP_005 | 5BTP | 0.1288 | 8 | B | ZMP/ZTP riboswitch | C | 38 | A | 39 | U | 40 | G | 41 | * | C | 15 | U | 16 | G | 25 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUG*UGG | 1 |
| CGUG*CUGGCGGAUUAG | 1 |
| CAUG*CUGACGGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*G | 1 |
| GU*UGGCGGAUUA | 1 |
| AU*UGACGGAAC | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.42 | Max 0.90
Coloring options: