Motif IL_09818.2 Version IL_09818.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5	1-4	1-5	2-3	4-5
1	IL_3WBM_004	3WBM	0.9810	0	Other IL	X+Y	RNA (25-MER)	U	23	C	24	*	G	2	U	3	A	4		cWW	cWW
2	IL_4V8P_272	4V8P	0.3376	1	Major groove platform with intercalation (H)	D1	LSU rRNA	U	2879	U	2880	*	A	2897	A	2898	G	2900	ntHS	cWW	cWW
3	IL_5TBW_111	5TBW	0.2828	1	Major groove platform with intercalation	1	LSU rRNA	U	2891	A	2892	*	U	2909	A	2910	G	2912	tHS	cWW	cWW
4	IL_4V9F_089	4V9F	0.1302	1	Major groove platform with intercalation	0	LSU rRNA	U	2557	G	2558	*	C	2575	A	2576	G	2578	ntHS	cWW	cWW
5	IL_4WF9_097	4WF9	0.0820	1	Major groove platform with intercalation	X	LSU rRNA	U	2549	G	2550	*	C	2567	A	2568	G	2570	ntHS	cWW	cWW
6	IL_4Y4O_274	4Y4O	0.0000	1	Major groove platform with intercalation (H)	2A	LSU rRNA	U	2522	G	2523	*	C	2540	A	2541	G	2543	ntHS	cWW	cWW
7	IL_5J7L_342	5J7L	0.0833	1	Major groove platform with intercalation	DA	LSU rRNA	U	2522	G	2523	*	C	2540	A	2541	G	2543	ntHS	cWW	cWW
8	IL_4IOA_093	4IOA	0.1087	1	Major groove platform with intercalation (H)	X	LSU rRNA	U	2501	G	2502	*	C	2519	A	2520	G	2522	ntHS	cWW	cWW
9	IL_4KQY_004	4KQY	0.4141	1	Minor groove platform	A	SAM-I riboswitch	C	49	G	50	*	C	73	A	74	G	76		cWW	cWW	ncSH
10	IL_4KQY_009	4KQY	0.4141	1	Minor groove platform	A	SAM-I riboswitch	C	49\|\|\|\|4_555	G	50\|\|\|\|4_555	*	C	73\|\|\|\|4_555	A	74\|\|\|\|4_555	G	76\|\|\|\|4_555		cWW	cWW	ncSH
11	IL_4V8P_252	4V8P	0.7806	2		D1	LSU rRNA	G	2391	A	2393	*	U	2969	A	2970	C	2972		cWW	cWW	cSH
12	IL_5TBW_092	5TBW	0.7963	2	Major groove platform with intercalation	1	LSU rRNA	G	2396	A	2398	*	U	2981	A	2982	C	2984		cWW	cWW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
UG*CAAG	5
CG*CAAG	2
GAA*UACC	2
UC*GUA	1
UU*AACG	1
UA*UAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	8
A*AC	2
*U	1
*AC	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform with intercalation (5)
Major groove platform with intercalation (H) (3)
Minor groove platform (2)
Other IL (1)
(1)
Basepair signature: cWW-tHS-cWW
Heat map statistics: Min 0.08 | Avg 0.49 | Max 1.00

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