Motif IL_09818.3 Version IL_09818.3 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3WBM_004 | 3WBM | 0.9810 | 0 | Other IL | X+Y | RNA (25-MER) | U | 23 | C | 24 | * | G | 2 | U | 3 | A | 4 | cWW | cWW | ||
| 2 | IL_5TBW_111 | 5TBW | 0.2828 | 1 | Major groove platform with intercalation | 1 | LSU rRNA | U | 2891 | A | 2892 | * | U | 2909 | A | 2910 | G | 2912 | tHS | cWW | cWW | |
| 3 | IL_4V9F_089 | 4V9F | 0.1302 | 1 | Major groove platform with intercalation | 0 | LSU rRNA | U | 2557 | G | 2558 | * | C | 2575 | A | 2576 | G | 2578 | ntHS | cWW | cWW | |
| 4 | IL_4WF9_097 | 4WF9 | 0.0820 | 1 | Major groove platform with intercalation | X | LSU rRNA | U | 2549 | G | 2550 | * | C | 2567 | A | 2568 | G | 2570 | ntHS | cWW | cWW | |
| 5 | IL_4Y4O_274 | 4Y4O | 0.0000 | 1 | Major groove platform with intercalation (H) | 2A | LSU rRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 6 | IL_5J7L_342 | 5J7L | 0.0833 | 1 | Major groove platform with intercalation | DA | LSU rRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 7 | IL_4IOA_093 | 4IOA | 0.1087 | 1 | Major groove platform with intercalation (H) | X | LSU rRNA | U | 2501 | G | 2502 | * | C | 2519 | A | 2520 | G | 2522 | ntHS | cWW | cWW | |
| 8 | IL_4KQY_004 | 4KQY | 0.4141 | 1 | Minor groove platform | A | SAM-I riboswitch | C | 49 | G | 50 | * | C | 73 | A | 74 | G | 76 | cWW | cWW | ncSH | |
| 9 | IL_4KQY_009 | 4KQY | 0.4141 | 1 | Minor groove platform | A | SAM-I riboswitch | C | 49||||4_555 | G | 50||||4_555 | * | C | 73||||4_555 | A | 74||||4_555 | G | 76||||4_555 | cWW | cWW | ncSH | |
| 10 | IL_5TBW_092 | 5TBW | 0.7963 | 2 | Major groove platform with intercalation | 1 | LSU rRNA | G | 2396 | A | 2398 | * | U | 2981 | A | 2982 | C | 2984 | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CAAG | 5 |
| CG*CAAG | 2 |
| UC*GUA | 1 |
| UA*UAAG | 1 |
| GAA*UACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 8 |
| *U | 1 |
| A*AC | 1 |
- Annotations
-
- Major groove platform with intercalation (5)
- Major groove platform with intercalation (H) (2)
- Minor groove platform (2)
- Other IL (1)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.45 | Max 1.00
Coloring options: