Motif IL_10822.1 Version IL_10822.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-4 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4W23_060 | 4W23 | 0.8217 | 3 | 2 | 18S ribosomal RNA | U | 1492 | C | 1493 | U | 1496 | A | 1498 | * | U | 1333 | G | 1334 | G | 1335 | cWW | ntSW | |||
| 2 | IL_1FJG_041 | 1FJG | 0.0000 | 1 | Isolated cWS basepair (H) | A | SSU rRNA | U | 1052 | G | 1053 | A | 1055 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | ncWS | cWW | |
| 3 | IL_3J7A_057 | 3J7A | 0.1951 | 1 | A | SSU rRNA | U | 1373 | G | 1374 | A | 1376 | U | 1377 | * | A | 1682 | U | 1683 | G | 1684 | cWW | ncWS | cWW | ||
| 4 | IL_4W23_059 | 4W23 | 0.2288 | 1 | 2 | 18S ribosomal RNA | U | 1329 | G | 1330 | A | 1332 | U | 1333 | * | A | 1498 | U | 1499 | G | 1500 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCAU*AUG | 3 |
| UCUGUGA*UGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA*U | 3 |
| CUGUG*G | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_10822.1 | Only in the parent motif |
|---|---|---|---|
| IL_74163.1 Compare | IL_1FJG_041, IL_3J7A_057 | IL_4W23_060, IL_4W23_059 | IL_1VX2_059 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Isolated cWS basepair (H) (1)
- Basepair signature
- cWW-L-cWS-cWW
- Heat map statistics
- Min 0.20 | Avg 0.40 | Max 0.90
Coloring options: