Motif IL_74163.1 Version IL_74163.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J7A_057 | 3J7A | 0.1951 | 1 | A | SSU rRNA | U | 1373 | G | 1374 | A | 1376 | U | 1377 | * | A | 1682 | U | 1683 | G | 1684 | cWW | ncWS | cWW | |
| 2 | IL_1FJG_041 | 1FJG | 0.0000 | 1 | Isolated cWS basepair (H) | A | SSU rRNA | U | 1052 | G | 1053 | A | 1055 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | ncWS | cWW |
| 3 | IL_1VX2_059 | 1VX2 | 0.8357 | 3 | 2 | 18S ribosomal RNA | U | 1492 | C | 1493 | U | 1496 | A | 1498 | * | U | 1333 | G | 1334 | G | 1335 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCAU*AUG | 2 |
| UGG*UCUGUGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA*U | 2 |
| G*CUGUG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_74163.1 | Only in the parent motif |
|---|---|---|---|
| IL_67813.2 Compare | IL_1FJG_041 | IL_1VX2_059, IL_3J7A_057 | IL_2AW7_049, IL_1S72_046, IL_4NVV_044, IL_2QBG_085, IL_3U5H_062, IL_3U5F_093, IL_4IOA_043, IL_2QBG_045, IL_4CUV_064, IL_3U5H_052, IL_3U5F_065, IL_4NVV_032, IL_3U5F_067, IL_3LOA_003, IL_1O9M_003, IL_4BPP_065, IL_1VW3_035, IL_1VW3_070 |
Children motifs
| Child motif | Common motif instances | Only in IL_74163.1 | Only in the child motif |
|---|---|---|---|
| IL_10822.1 Compare | IL_1FJG_041, IL_3J7A_057 | IL_1VX2_059 | IL_4W23_060, IL_4W23_059 |
- Annotations
-
- (2)
- Isolated cWS basepair (H) (1)
- Basepair signature
- cWW-L-cWS-cWW
- Heat map statistics
- Min 0.20 | Avg 0.43 | Max 0.91
Coloring options: