Motif IL_14148.1 Version IL_14148.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4Y4O_208 | 4Y4O | 0.3384 | 0 | 2A | LSU rRNA | G | 875 | C | 876 | U | 877 | * | A | 899 | A | 900 | A | 901 | C | 902 | cWW | ncWW | cWW | tSH | ||
| 2 | IL_4V88_411 | 4V88 | 0.0000 | 0 | Minor groove platform with extra cWW | A6 | SSU rRNA | G | 516 | U | 517 | A | 518 | * | U | 533 | A | 534 | A | 535 | C | 536 | cWW | ncWW | cWW | tSH | |
| 3 | IL_5J7L_006 | 5J7L | 0.4510 | 0 | Minor groove platform with extra cWW | AA | SSU rRNA | C | 67 | G | 68 | G | 69 | * | C | 99 | G | 100 | A | 101 | G | 102 | cWW | cWW | cWW | tSH | |
| 4 | IL_4V88_451 | 4V88 | 0.5804 | 3 | Minor groove platform with extra cWW | A6 | SSU rRNA | U | 1276 | G | 1277 | G | 1278 | * | U | 1430 | G | 1433 | U | 1434 | A | 1436 | cWW | ncWWa | cWW | tSH | |
| 5 | IL_4WF9_003 | 4WF9 | 0.6439 | 0 | Minor groove platform with extra cWW | X | LSU rRNA | G | 42 | A | 43 | A | 44 | * | U | 480 | C | 481 | U | 482 | C | 483 | cWW | cWW | cSH | ||
| 6 | IL_3MXH_001 | 3MXH | 0.7338 | 1 | Minor groove platform with extra cWW | R | c-di-GMP riboswitch | C | 11 | A | 12 | C | 13 | * | G | 94 | A | 95 | G | 97 | G | 98 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCU*AAAC | 1 |
| GUA*UAAC | 1 |
| CGG*CGAG | 1 |
| UGG*UCUGUGA | 1 |
| GAA*UCUC | 1 |
| CAC*GAUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*AA | 1 |
| U*AA | 1 |
| G*GA | 1 |
| G*CUGUG | 1 |
| A*CU | 1 |
| A*AUG | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform with extra cWW (5)
- (1)
- Basepair signature
- cWW-cWW-tSH-cWW
- Heat map statistics
- Min 0.34 | Avg 0.54 | Max 0.88
Coloring options: