Motif IL_14487.1 Version IL_14487.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 3-10 | 4-9 | 5-8 | 6-7 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1Y0Q_001 | 1Y0Q | 0.8613 | 0 | A | Group I catalytic intron | G | 80 | C | 81 | A | 82 | A | 83 | U | 84 | C | 85 | * | G | 53 | G | 54 | A | 55 | A | 56 | C | 57 | A | 58 | C | 59 | ncWW | tSH | tHS | ncSW | cWW |
| 2 | IL_3J79_121 | 3J79 | 0.0000 | 0 | A | LSU rRNA | C | 3628 | U | 3629 | U | 3630 | U | 3631 | U | 3632 | U | 3633 | * | A | 3652 | G | 3653 | C | 3654 | U | 3655 | A | 3656 | G | 3657 | G | 3658 | cWW | ncWW | ncWW | cWW | |
| 3 | IL_5GAN_009 | 5GAN | 0.7716 | 0 | V | U4 snRNA | U | 94 | C | 95 | A | 96 | U | 97 | G | 98 | G | 99 | * | C | 133 | U | 134 | A | 135 | U | 136 | G | 137 | U | 138 | A | 139 | cWW | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAUC*GGAACAC | 1 |
| CUUUUU*AGCUAGG | 1 |
| UCAUGG*CUAUGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAU*GAACA | 1 |
| UUUU*GCUAG | 1 |
| CAUG*UAUGU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-cWW-L-R-R-R-L-L-cWW
- Heat map statistics
- Min 0.77 | Avg 0.58 | Max 0.99
Coloring options: