IL_5GAN_009
3D structure
- PDB id
- 5GAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UCAUGG*CUAUGUA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14487.1
- Basepair signature
- cWW-R-cWW-L-R-R-R-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
5GAN|1|V|U|94
5GAN|1|V|C|95
5GAN|1|V|A|96
5GAN|1|V|U|97
5GAN|1|V|G|98
5GAN|1|V|G|99
*
5GAN|1|V|C|133
5GAN|1|V|U|134
5GAN|1|V|A|135
5GAN|1|V|U|136
5GAN|1|V|G|137
5GAN|1|V|U|138
5GAN|1|V|A|139
Current chains
- Chain V
- U4 snRNA
Nearby chains
- Chain B
- Pre-mRNA-splicing helicase BRR2
- Chain k
- Small nuclear ribonucleoprotein-associated protein B
- Chain l
- Small nuclear ribonucleoprotein Sm D1
- Chain m
- Small nuclear ribonucleoprotein Sm D2
- Chain n
- Small nuclear ribonucleoprotein Sm D3
Coloring options: