Motif IL_14526.1 Version IL_14526.1 of this group appears in releases 3.18 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3BNR_008 | 3BNR | 0.8860 | 1 | Minor groove platform related | C+D | A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 13 | C | 14 | A | 16 | G | 17 | cWW | cwW | ncwW | cWW | |
| 2 | IL_4PMI_004 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||13_455 | G | 47||||13_455 | G | 48||||13_455 | C | 49||||13_455 | * | G | 70||||13_455 | G | 71||||13_455 | A | 73||||13_455 | C | 74||||13_455 | cWW | ntWW | cWW | tWW | cWW |
| 3 | IL_4PMI_010 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||24_444 | G | 47||||24_444 | G | 48||||24_444 | C | 49||||24_444 | * | G | 70||||24_444 | G | 71||||24_444 | A | 73||||24_444 | C | 74||||24_444 | cWW | ntWW | cWW | tWW | cWW |
| 4 | IL_4PMI_012 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||6_445 | G | 47||||6_445 | G | 48||||6_445 | C | 49||||6_445 | * | G | 70||||6_445 | G | 71||||6_445 | A | 73||||6_445 | C | 74||||6_445 | cWW | ntWW | cWW | tWW | cWW |
| 5 | IL_4PMI_006 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||18_445 | G | 47||||18_445 | G | 48||||18_445 | C | 49||||18_445 | * | G | 70||||18_445 | G | 71||||18_445 | A | 73||||18_445 | C | 74||||18_445 | cWW | ntWW | cWW | tWW | cWW |
| 6 | IL_4PMI_008 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | ntWW | cWW | tWW | cWW |
| 7 | IL_4PMI_002 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||12_455 | G | 47||||12_455 | G | 48||||12_455 | C | 49||||12_455 | * | G | 70||||12_455 | G | 71||||12_455 | A | 73||||12_455 | C | 74||||12_455 | cWW | ntWW | cWW | tWW | cWW |
| 8 | IL_6CZR_120 | 6CZR | 0.8722 | 1 | Minor groove platform related | 1a | SSU rRNA | C | 127 | U | 128 | C | 130 | C | 131 | * | G | 223 | A | 224 | U | 225 | G | 226 | cWW | ncwW | cWW | ||
| 9 | IL_5J7L_010 | 5J7L | 0.9031 | 1 | Minor groove platform related | AA | SSU rRNA | C | 132 | U | 133 | C | 135 | C | 136 | * | G | 227 | A | 228 | U | 229 | G | 230 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GGUAC | 6 |
| CACC*GCAAG | 1 |
| CUACC*GAUG | 1 |
| CUGCC*GAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*GUA | 6 |
| AC*CAA | 1 |
| UAC*AU | 1 |
| UGC*AU | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tWW and non-canonical cWW (6)
- Minor groove platform related (3)
- Basepair signature
- cWW-cWW-tWW-cWW
- Heat map statistics
- Min 0.18 | Avg 0.45 | Max 0.96
Coloring options: