Motif IL_15421.1 Version IL_15421.1 of this group appears in releases 3.15 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-4 | 3-5 | 3-8 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4PDB_001 | 4PDB | 0.6398 | 0 | Other IL | I | SELEX RNA aptamer | C | 9 | A | 10 | G | 11 | U | 12 | G | 13 | * | C | 28 | A | 29 | G | 30 | cWW | cwW | cSH | cWW | ||||
| 2 | IL_5CZZ_001 | 5CZZ | 0.2953 | 0 | B | RNA (73-MER) | A | 42 | A | 43 | U | 44 | C | 45 | U | 46 | * | A | 29 | C | 30 | U | 31 | cWW | cWWa | ncSH | ncwW | cWW | ||||
| 3 | IL_6CK5_002 | 6CK5 | 0.2318 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 42 | A | 43 | C | 44 | cWW | cWW | cSH | cSH | tHS | cWW | ||
| 4 | IL_6DME_002 | 6DME | 0.2221 | 0 | 8-nt loop receptor | A | ppGpp Riboswitch | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | * | G | 37 | A | 38 | C | 39 | cWW | cWW | ncSH | ncSH | tHS | cWW | ||
| 5 | IL_5T83_002 | 5T83 | 0.0000 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 39 | U | 40 | C | 41 | cWW | ncWB | cSH | ncSH | cWW | |||
| 6 | IL_5U3G_002 | 5U3G | 0.1084 | 0 | 8-nt loop receptor | B | Guanidine-I riboswitch | G | 10 | G | 11 | U | 12 | U | 13 | C | 14 | * | G | 27 | U | 28 | C | 29 | cWW | cWB | cSH | ncWw | cWW | |||
| 7 | IL_6DLR_002 | 6DLR | 0.1368 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 42 | U | 43 | C | 44 | cWW | cWB | ncSH | cSH | ncWw | cWW | ||
| 8 | IL_4WF9_012 | 4WF9 | 0.8780 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 409 | G | 410 | A | 411 | U | 412 | C | 413 | * | G | 304 | A | 305 | C | 306 | cWW | ncWB | ncWS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUC*GUC | 3 |
| GGAUC*GAC | 2 |
| CAGUG*CAG | 1 |
| AAUCU*ACU | 1 |
| GGUUC*GAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUU*U | 3 |
| GAU*A | 2 |
| AGU*A | 1 |
| AUC*C | 1 |
| GUU*A | 1 |
- Annotations
-
- 8-nt loop receptor (5)
- Other IL (1)
- Major groove minor groove platform with extra cWW (1)
- (1)
- Basepair signature
- cWW-cWW-cSH-cSH-cWW
- Heat map statistics
- Min 0.11 | Avg 0.43 | Max 0.94
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