Motif IL_15944.2 Version IL_15944.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-3 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_389 | 4V88 | 0.6879 | 3 | A6 | SSU rRNA | U | 58 | C | 59 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | ncWH | cWW | ||
| 2 | IL_4V5O_088 | 4V5O | 0.5982 | 3 | BA | SSU rRNA | U | 57 | G | 58 | G | 62 | * | C | 83 | U | 84 | G | 85 | ncWW | ncWW | cWW | ||
| 3 | IL_5TBW_145 | 5TBW | 0.4175 | 1 | Isolated non-canonical cWW pair | 4 | 5.8S rRNA | U | 93 | C | 94 | A | 96 | * | U | 64 | A | 65 | A | 66 | cWW | ncWW | cWW | |
| 4 | IL_4IOA_037 | 4IOA | 0.1191 | 1 | Isolated non-canonical cWW pair (H) | X | LSU rRNA | G | 1042 | A | 1043 | G | 1045 | * | C | 1132 | G | 1133 | C | 1134 | cWW | cWW | cWW | |
| 5 | IL_5J7L_282 | 5J7L | 0.0967 | 1 | Isolated non-canonical cWW pair | DA | LSU rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW | |
| 6 | IL_4Y4O_218 | 4Y4O | 0.0000 | 1 | Isolated non-canonical cWW pair (H) | 2A | LSU rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW | |
| 7 | IL_5TBW_077 | 5TBW | 0.9077 | 4 | Intercalated tWH | 1 | LSU rRNA | A | 1901 | G | 1902 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW | ||
| 8 | IL_4V8P_239 | 4V8P | 0.9132 | 4 | D1 | LSU rRNA | A | 1925 | G | 1926 | G | 1930 | * | C | 2328 | U | 2329 | U | 2331 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUG*CGC | 3 |
| AGUCGG*CUGU | 2 |
| UCUAAG*CUG | 1 |
| UGCCAG*CUG | 1 |
| UCGA*UAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*G | 3 |
| GUCG*UG | 2 |
| CUAA*U | 1 |
| GCCA*U | 1 |
| CG*A | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Isolated non-canonical cWW pair (H) (2)
- Isolated non-canonical cWW pair (2)
- Intercalated tWH (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.58 | Max 1.08
Coloring options: