Motif IL_16929.1 Version IL_16929.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MJI_003 | 1MJI | 0.3734 | 2 | Multiple bulged bases | D | G | 51 | G | 54 | * | C | 30 | C | 31 | cWW | cWW |
| 2 | IL_4YAZ_008 | 4YAZ | 0.2162 | 2 | Multiple bulged bases | R | C | 64 | C | 67 | * | G | 51 | G | 52 | cWW | cWW |
| 3 | IL_4V9F_101 | 4V9F | 0.1614 | 1 | Major groove intercalation | 9 | C | 64 | G | 66 | * | C | 15 | G | 16 | cWW | cWW |
| 4 | IL_5FDV_111 | 5FDV | 0.1502 | 1 | Single bulged A | 1B | C | 65 | G | 67 | * | C | 17 | G | 18 | cWW | cWW |
| 5 | IL_4WF9_112 | 4WF9 | 0.2113 | 1 | Major groove intercalation | Y | U | 63 | G | 65 | * | C | 15 | A | 16 | cWW | cWW |
| 6 | IL_4V9F_021 | 4V9F | 0.0000 | 2 | Multiple bulged bases | 0 | C | 699 | G | 702 | * | C | 726 | G | 727 | cWW | cWW |
| 7 | IL_4LFB_005 | 4LFB | 0.1447 | 2 | Multiple bulged bases | A | C | 63 | G | 66 | * | C | 103 | G | 104 | cWW | cWW |
| 8 | IL_4YAZ_007 | 4YAZ | 0.2558 | 2 | Multiple bulged bases | R | U | 47 | G | 50 | * | C | 68 | G | 69 | cWW | cWW |
| 9 | IL_5J7L_355 | 5J7L | 0.2404 | 1 | Major groove intercalation | DB | U | 65 | G | 67 | * | C | 17 | G | 18 | cWW | cWW |
| 10 | IL_4Y4O_238 | 4Y4O | 0.2135 | 1 | Single bulged A (H) | 2A | U | 1489 | G | 1491 | * | C | 1499 | G | 1500 | cWW | cWW |
| 11 | IL_2OZB_001 | 2OZB | 0.3971 | 1 | Single bulged A | C | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
| 12 | IL_4V9F_041 | 4V9F | 0.2724 | 1 | Single bulged G | 0 | U | 1136 | G | 1138 | * | C | 1225 | G | 1226 | cWW | cWW |
| 13 | IL_5J7L_331 | 5J7L | 0.3600 | 1 | Single bulged U | DA | U | 2202 | G | 2204 | * | U | 2220 | G | 2221 | cWW | cWW |
| 14 | IL_4V8P_221 | 4V8P | 0.3269 | 1 | Single bulged A (H) | D1 | U | 1424 | G | 1426 | * | U | 1437 | A | 1438 | cWW | cWW |
| 15 | IL_4V5O_143 | 4V5O | 0.4523 | 2 | BA | U | 1244 | A | 1247 | * | U | 1408 | G | 1409 | ncWW | cWW | |
| 16 | IL_5J7L_026 | 5J7L | 0.4190 | 5 | AA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW | |
| 17 | IL_4LFB_022 | 4LFB | 0.4397 | 5 | A | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW | |
| 18 | IL_1KXK_003 | 1KXK | 0.5377 | 2 | Multiple bulged bases | A | U | 28 | G | 29 | * | C | 42 | G | 45 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*CG | 3 |
| CAG*CG | 2 |
| CGUAAAG*CG | 2 |
| GAAG*CC | 1 |
| CAGC*GG | 1 |
| UAG*CA | 1 |
| CAUG*CG | 1 |
| CGUG*CG | 1 |
| UAAG*CG | 1 |
| UGG*CG | 1 |
| UUG*UG | 1 |
| UUG*UA | 1 |
| UGCA*UG | 1 |
| UG*CACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 6 |
| AA* | 2 |
| U* | 2 |
| GUAAA* | 2 |
| AG* | 1 |
| AU* | 1 |
| GU* | 1 |
| G* | 1 |
| GC* | 1 |
| *AC | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (6)
- (3)
- Major groove intercalation (3)
- Single bulged A (2)
- Single bulged A (H) (2)
- Single bulged G (1)
- Single bulged U (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.38 | Max 0.83
Coloring options: