Motif IL_18471.1 Version IL_18471.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PDR_004 | 3PDR | 0.2900 | 0 | Major groove platform with extra cWW | X | M-box riboswitch (ykoK leader) | C | 33 | U | 34 | C | 35 | C | 36 | * | G | 149 | U | 150 | G | 151 | cWW | cSH | cwW | cWW | |
| 2 | IL_4V9F_003 | 4V9F | 0.0000 | 0 | Major groove platform with extra cWW | 0 | LSU rRNA | C | 440 | A | 441 | A | 442 | C | 443 | * | G | 39 | C | 40 | G | 41 | cWW | cSH | cWWa | ncWW | cWW |
| 3 | IL_3OXE_002 | 3OXE | 0.6938 | 1 | A | domain II of glycine riboswitch | C | 31 | G | 32 | A | 34 | G | 35 | * | C | 70 | A | 71 | G | 72 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCC*GUG | 1 |
| CAAC*GCG | 1 |
| CGAAG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*U | 1 |
| AA*C | 1 |
| GAA*A | 1 |
- Annotations
-
- Major groove platform with extra cWW (2)
- (1)
- Basepair signature
- cWW-cWW-cSH-cWW
- Heat map statistics
- Min 0.29 | Avg 0.39 | Max 0.75
Coloring options: