Motif IL_19389.1 Version IL_19389.1 of this group appears in releases 3.3 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 3-4 | 3-5 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_032 | 4LFB | 0.6357 | 1 | Left turn | A | SSU rRNA | G | 774 | G | 775 | G | 776 | G | 778 | * | U | 804 | C | 805 | cWW | cWW | ||
| 2 | IL_5J7L_036 | 5J7L | 0.6207 | 1 | Left turn | AA | SSU rRNA | G | 774 | G | 775 | G | 776 | G | 778 | * | U | 804 | C | 805 | cWW | cWW | ||
| 3 | IL_5DCV_006 | 5DCV | 0.1247 | 0 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 45 | U | 46 | A | 47 | A | 48 | * | U | 5 | G | 6 | cWW | cSH | ntSH | cWW |
| 4 | IL_1U6B_009 | 1U6B | 0.1111 | 0 | Major groove platform with intercalated tWH | B | 197-MER | C | 147 | U | 148 | A | 149 | A | 150 | * | U | 162 | G | 163 | cWW | cSH | cWW | |
| 5 | IL_5VCI_003 | 5VCI | 0.0660 | 0 | Major groove platform with intercalated tWH | A+B | RNA (22-mer) + RNA (12-mer) | C | 8 | U | 9 | A | 10 | A | 11 | * | U | 4 | G | 5 | cWW | cSH | cWW | |
| 6 | IL_4PCJ_003 | 4PCJ | 0.0000 | 0 | Major groove platform with intercalated tWH | A | trCUG-3('5) | C | 8 | U | 9 | A | 10 | A | 11 | * | U | 27 | G | 28 | cWW | cSH | cWW | |
| 7 | IL_5XTM_005 | 5XTM | 0.0912 | 0 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 41 | U | 42 | A | 43 | A | 44 | * | U | 5 | G | 6 | cWW | cSH | ntSH | cWW |
| 8 | IL_5TBW_080 | 5TBW | 0.7618 | 0 | 1 | LSU rRNA | C | 2098 | A | 2099 | A | 2100 | C | 2101 | * | G | 1947 | G | 1948 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAA*UG | 5 |
| GGGAG*UC | 2 |
| CAAC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA* | 5 |
| GGA* | 2 |
| AA* | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with intercalated tWH (5)
- Left turn (2)
- (1)
- Basepair signature
- cWW-L-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.42 | Max 1.00
Coloring options: