Motif IL_19389.2 Version IL_19389.2 of this group appears in releases 3.18 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 3-4 | 3-5 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LCK_008 | 4LCK | 0.8970 | 0 | Other IL | F | T-BOX RIBOSWITCH STEM I | G | 28 | A | 29 | U | 30 | U | 31 | * | A | 77 | C | 78 | cWW | cWW | ||
| 2 | IL_6CZR_144 | 6CZR | 0.6600 | 1 | Left turn | 1a | SSU rRNA | G | 758 | G | 759 | G | 760 | G | 762 | * | U | 788 | C | 789 | cWW | cWW | ||
| 3 | IL_4LFB_032 | 4LFB | 0.6357 | 1 | Left turn | A | SSU rRNA | G | 774 | G | 775 | G | 776 | G | 778 | * | U | 804 | C | 805 | cWW | cWW | ||
| 4 | IL_5J7L_036 | 5J7L | 0.6207 | 1 | Left turn | AA | SSU rRNA | G | 774 | G | 775 | G | 776 | G | 778 | * | U | 804 | C | 805 | cWW | cWW | ||
| 5 | IL_5XTM_005 | 5XTM | 0.0912 | 0 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 41 | U | 42 | A | 43 | A | 44 | * | U | 5 | G | 6 | cWW | cSH | ntSH | cWW |
| 6 | IL_4PCJ_003 | 4PCJ | 0.0000 | 0 | Major groove platform with intercalated tWH | A | trCUG-3('5) | C | 8 | U | 9 | A | 10 | A | 11 | * | U | 27 | G | 28 | cWW | cSH | cWW | |
| 7 | IL_5VCI_003 | 5VCI | 0.0660 | 0 | Major groove platform with intercalated tWH | A+B | RNA (22-mer) + RNA (12-mer) | C | 8 | U | 9 | A | 10 | A | 11 | * | U | 4 | G | 5 | cWW | cSH | cWW | |
| 8 | IL_1U6B_009 | 1U6B | 0.1111 | 0 | Major groove platform with intercalated tWH | B | 197-MER | C | 147 | U | 148 | A | 149 | A | 150 | * | U | 162 | G | 163 | cWW | cSH | cWW | |
| 9 | IL_5DCV_006 | 5DCV | 0.1247 | 0 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 45 | U | 46 | A | 47 | A | 48 | * | U | 5 | G | 6 | cWW | cSH | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAA*UG | 5 |
| GGGAG*UC | 3 |
| GAUU*AC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA* | 5 |
| GGA* | 3 |
| AU* | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 |
|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with intercalated tWH (5)
- Left turn (3)
- Other IL (1)
- Basepair signature
- cWW-L-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.45 | Max 0.95
Coloring options: