Motif IL_19557.2 Version IL_19557.2 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4X4V_001 | 4X4V | 0.0000 | 0 | B | Human MenBeta minihelix ending in CCACC | C | 3 | G | 4||A | C | 5 | * | G | 27 | G | 32 | cWW | ncWW | |
| 2 | IL_2W2H_002 | 2W2H | 0.8604 | 1 | Isolated cWH basepair | R | RNA (21-mer) | G | 8 | A | 9 | U | 10 | * | G | 17 | C | 19 | cWW | ncWW |
| 3 | IL_4V88_437 | 4V88 | 0.9339 | 5 | A6 | SSU rRNA | C | 1034 | G | 1035 | A | 1036 | * | U | 1095 | G | 1101 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGC*GG | 1 |
| GAU*GUC | 1 |
| CGA*UCUUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G* | 1 |
| A*U | 1 |
| G*CUUUG | 1 |
- Annotations
-
- (2)
- Isolated cWH basepair (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.29 | Avg 0.46 | Max 0.93
Coloring options: