Motif IL_19724.2 Version IL_19724.2 of this group appears in releases 3.80 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 5-6 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V9F_009 | 4V9F | 0.2310 | 1 | 0 | LSU rRNA | C | 260 | A | 261 | A | 262 | G | 264 | U | 265 | * | A | 248 | G | 249 | cWW | cWW |
2 | IL_5TBW_007 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | A | 144 | G | 145 | U | 146 | G | 148 | U | 149 | * | A | 123 | U | 124 | cWW | cWW |
3 | IL_8C3A_007 | 8C3A | 0.0856 | 1 | 1 | LSU rRNA | A | 143 | G | 144 | U | 145 | G | 147 | U | 148 | * | A | 122 | U | 123 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AGUUGU*AU | 2 |
CAAUGU*AG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUUG* | 2 |
AAUG* | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-L-cSH
- Heat map statistics
- Min 0.09 | Avg 0.12 | Max 0.23
Coloring options: