Motif IL_19954.2 Version IL_19954.2 of this group appears in releases 3.80 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11		12	1-12	2-11	3-10	4-9	5-8	6-7
1	IL_5TBW_026	5TBW	0.1633	1	LSU rRNA	C	768	G	769	G	770	A	771	U	772	G	773	*	C	758	U	759	G	760	A	761	U	762	G	763	cWW	ntSH	ntSH	tHS	cWw	cWW
2	IL_8C3A_028	8C3A	0.0000	1	LSU rRNA	C	764	G	765	G	766	A	767	U	768	G	769	*	C	754	U	755	G	756	A	757	U	758	G	759	cWW	tSH	ntSH	tHS	cWw	cWW
3	IL_4V88_462	4V88	0.2391	A6	SSU rRNA	G	1540	G	1541	G	1542	A	1543	U	1544	A	1545	*	U	1566	U	1567	C	1568	A	1569	A	1570	C	1571	cWW	tSH	tSH		cWw	cWW
4	IL_4LFB_055	4LFB	0.2508	A	SSU rRNA	C	1303	G	1304	G	1305	A	1306	U	1307	U	1308	*	A	1329	U	1330	G	1331	A	1332	A	1333	G	1334	cWW	tSH	ntSH	ntHS	cWw	cWW
5	IL_5J7L_057	5J7L	0.2396	AA	SSU rRNA	C	1303	G	1304	G	1305	A	1306	U	1307	U	1308	*	A	1329	U	1330	G	1331	A	1332	A	1333	G	1334	cWW	tSH		tHS	cWw	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGGAUG*CUGAUG	2
CGGAUU*AUGAAG	2
GGGAUA*UUCAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGAU*UGAU	2
GGAU*UGAA	2
GGAU*UCAA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17	2024-08-14
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-tSH-tSH-tHS-cWW-cWW
Heat map statistics: Min 0.12 | Avg 0.17 | Max 0.26

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