Motif IL_20624.1 Version IL_20624.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_7A0S_023 | 7A0S | 0.2176 | 1 | Major groove platform; stack outside cWW | X | LSU rRNA | U | 857 | G | 858 | U | 860 | * | A | 944 | G | 945 | cWW | cWW | ||
2 | IL_4V9F_044 | 4V9F | 0.0000 | 1 | Major groove platform | 0 | LSU rRNA | A | 1191 | A | 1193 | A | 1194 | * | U | 1205 | U | 1206 | cWW | cSH | ntSH | cWW |
3 | IL_5J7L_385 | 5J7L | 0.2427 | 1 | DA | LSU rRNA | G | 1087 | A | 1089 | A | 1090 | * | U | 1101 | C | 1102 | cWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGUU*AG | 1 |
AAAA*UU | 1 |
GAAA*UC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AA* | 2 |
GU* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform (1)
- (1)
- Major groove platform; stack outside cWW (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.22 | Avg 0.17 | Max 0.29
Coloring options: