Motif IL_21062.1 Version IL_21062.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-5 | 5-10 | 6-9 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX6_123 | 1VX6 | 0.0000 | 0 | A | 28S ribosomal RNA | U | 3405 | U | 3406 | G | 3407 | G | 3408 | U | 3409 | A | 3410 | C | 3411 | * | G | 3416 | G | 3417 | A | 3418 | U | 3419 | U | 3420 | A | 3421 | cWW | cwW | cSH | tWH | tHS | cWW | ||
| 2 | IL_1UN6_004 | 1UN6 | 0.1474 | 0 | 7x6 Sarcin-Ricin with UU cWW pair; G-bulge | F | 5S RIBOSOMAL RNA | U | 72 | U | 73 | A | 74 | G | 75 | U | 76 | A | 77 | C | 78 | * | G | 98 | G | 99 | A | 100 | A | 101 | U | 102 | A | 103 | cWW | cwW | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGGUAC*GGAUUA | 1 |
| UUAGUAC*GGAAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGUA*GAUU | 1 |
| UAGUA*GAAU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_21062.1 | Only in the parent motif |
|---|---|---|---|
| IL_97191.1 Compare | IL_1UN6_004 | IL_1VX6_123 |
Children motifs
This motif has no children motifs.- Annotations
-
- 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)
- Basepair signature
- cWW-cWW-L-R-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.15 | Avg 0.07 | Max 0.15
Coloring options: