Motif IL_21137.1 Version IL_21137.1 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	2-5	3-4
1	IL_2AW7_046	2AW7	0.5123	2		A	SSU rRNA	G	993	A	996	U	997	*	A	1044	C	1045	cWW	cWS	cWW
2	IL_1FJG_039	1FJG	0.4922	2	Minor groove platform (H)	A	SSU rRNA	G	993	A	996	U	997	*	A	1044	C	1045	cWW	cWS	cWW
3	IL_4W21_118	4W21	0.1914	1		5	LSU rRNA	C	3700	A	3702	G	3703	*	C	3749	G	3750	cWW		cWW
4	IL_4IOA_066	4IOA	0.1726	1	Minor groove platform, major groove intercalation (H)	X	LSU rRNA	C	1829	G	1831	G	1832	*	C	1885	G	1886	cWW		cWW
5	IL_1S72_066	1S72	0.0000	1	Minor groove platform, major groove intercalation (H)	0	LSU rRNA	C	1893	A	1895	G	1896	*	C	1943	G	1944	cWW		cWW
6	IL_4QCN_067	4QCN	0.1392	1		A	LSU rRNA	C	1868	G	1870	G	1871	*	C	1924	G	1925	cWW	ntHS	cWW
7	IL_1VX6_092	1VX6	0.1440	1		A	LSU rRNA	C	2489	A	2491	G	2492	*	C	2538	G	2539	cWW		cWW
8	IL_4A1B_086	4A1B	0.1670	1		1	LSU rRNA	C	2191	A	2193	G	2194	*	C	2240	G	2241	cWW		cWW
9	IL_2QBG_072	2QBG	0.1776	1		B	LSU rRNA	C	1837	G	1839	G	1840	*	C	1902	G	1903	cWW	tHS	cWW
10	IL_4IOA_106	4IOA	0.3322	1		Y	5S rRNA	G	53	C	55	G	56	*	C	32	C	33	cWW	ntHS	cWW
11	IL_4BPP_040	4BPP	0.3842	1		A	SSU rRNA	G	785	A	787	U	788	*	A	730	C	731	cWW	ncWS	cWW
12	IL_2AW7_007	2AW7	0.4064	1		A	SSU rRNA	U	70	A	72	C	73	*	G	97	A	98	cWW	cWS	cWW
13	IL_3Q1Q_003	3Q1Q	0.3634	2		B	RNase P class A	G	103	A	106	G	107	*	C	209	C	210	cWW	cWS	cWW
14	IL_3U5H_145	3U5H	0.5603	1		7	5S rRNA	G	49	A	51	G	52	*	C	28	C	29	cWW	cWS	cWW
15	IL_4CUV_152	4CUV	0.6698	1		3	5S rRNA	G	49	A	51	G	52	*	C	28	C	29	cWW	ncWS	cWW
16	IL_4QCN_054	4QCN	0.6836	0		A	LSU rRNA	G	1495	A	1496	G	1497	*	C	1509	C	1510	cWW		cWW
17	IL_2XXA_013	2XXA	0.8765	0		G	SSRP RNA	G	68	A	69	U	70	*	G	28	C	29	cWW		cWW
18	IL_4W23_011	4W23	0.8103	0		2	SSU rRNA	A	339	C	340	C	341	*	G	123	U	124	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCAG*CG	4
CCGG*CG	3
GACAU*AC	2
GUAG*CC	2
GUCG*CC	1
GAAU*AC	1
UAAC*GA	1
GACAG*CC	1
GAG*CC	1
GAU*GC	1
ACC*GU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CA*	4
ACA*	3
CG*	3
AA*	2
UA*	2
A*	2
UC*	1
C*	1

Release history

Release	1.18
Date	2014-10-07
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_21137.1	Only in the parent motif
IL_94430.8 Compare	IL_4QCN_054, IL_2QBG_072, IL_4CUV_152, IL_4QCN_067, IL_4IOA_066, IL_4IOA_106, IL_3Q1Q_003, IL_4A1B_086, IL_2XXA_013, IL_1S72_066, IL_2AW7_007, IL_4BPP_040, IL_3U5H_145	IL_1FJG_039, IL_4W23_011, IL_1VX6_092, IL_4W21_118, IL_2AW7_046	IL_4TS2_002, IL_4CUV_111
IL_73000.3 Compare	IL_1FJG_039, IL_2AW7_046	IL_4QCN_054, IL_2QBG_072, IL_4CUV_152, IL_4QCN_067, IL_4A1B_086, IL_4W23_011, IL_4IOA_066, IL_4IOA_106, IL_3Q1Q_003, IL_4W21_118, IL_2AW7_007, IL_2XXA_013, IL_1S72_066, IL_1VX6_092, IL_4BPP_040, IL_3U5H_145	IL_2AW7_054, IL_2AW7_044, IL_2AW7_013, IL_3IWN_005, IL_4A1B_066, IL_2QBG_003, IL_3UCZ_004
IL_44540.7 Compare	IL_1VX6_092	IL_1FJG_039, IL_4QCN_054, IL_2QBG_072, IL_4CUV_152, IL_4QCN_067, IL_2AW7_046, IL_4W23_011, IL_4IOA_066, IL_4IOA_106, IL_3Q1Q_003, IL_4W21_118, IL_2AW7_007, IL_2XXA_013, IL_1S72_066, IL_4A1B_086, IL_4BPP_040, IL_3U5H_145	IL_4CUV_102, IL_4CUV_044, IL_4BPP_005, IL_4BPP_069, IL_2AW7_050, IL_1FJG_004, IL_4IOA_076, IL_2QBG_008, IL_2AW7_004, IL_2QWY_006, IL_1FJG_042, IL_2GDI_007, IL_2QWY_003, IL_2AW7_035, IL_2GDI_003, IL_1VWW_069, IL_4CUX_068, IL_3U5F_062, IL_3U5F_005, IL_4QCN_003, IL_3J7A_004, IL_1VX2_055, IL_4CUX_028, IL_4CUX_029, IL_4BPP_059, IL_1VWW_043, IL_3J7A_060, IL_3IWN_001, IL_4QCN_028, IL_1VX6_046, IL_1VX6_101, IL_2QBG_081, IL_1VW3_065, IL_1VWW_015, IL_2AW7_045, IL_3U5F_029, IL_4A1B_020, IL_2AW7_067, IL_4A1B_049, IL_4A1B_128, IL_1FJG_052, IL_1FJG_051, IL_1S72_075, IL_4IOA_027, IL_3RW6_001, IL_4IOA_003, IL_4QCN_069, IL_1S72_033, IL_1U6B_007, IL_3U5F_071, IL_3J7A_031, IL_4QCN_077, IL_1VWW_124, IL_1S72_035, IL_3U5H_041, IL_1Y0Q_003, IL_1FJG_038, IL_3J7A_055, IL_4A1B_096, IL_4CUX_058, IL_3U5H_099

Children motifs

This motif has no children motifs.

Annotations: (15)
Minor groove platform, major groove intercalation (H) (2)
Minor groove platform (H) (1)
Basepair signature: cWW-cWS-cWW
Heat map statistics: Min 0.14 | Avg 0.50 | Max 0.96

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Coloring options: Nucleotide numbers

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