Motif IL_21340.1 Version IL_21340.1 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_131 | 5TBW | 0.2576 | 1 | Single bulged U | 1 | LSU rRNA | C | 3324 | G | 3325 | * | U | 3381 | G | 3383 | cWW | cWW |
| 2 | IL_5J7L_331 | 5J7L | 0.2542 | 1 | Single bulged U | DA | LSU rRNA | U | 2220 | G | 2221 | * | U | 2202 | G | 2204 | cWW | cWW |
| 3 | IL_5LYS_008 | 5LYS | 0.0000 | 1 | Single bulged U | B | 7SK RNA | C | 45 | G | 46 | * | C | 62 | G | 64 | cWW | cWW |
| 4 | IL_5J7L_334 | 5J7L | 0.1705 | 1 | Single bulged U | DA | LSU rRNA | G | 2414 | G | 2415 | * | U | 2401 | C | 2403 | cWW | cWW |
| 5 | IL_4WF9_088 | 4WF9 | 0.2316 | 1 | Single bulged U | X | LSU rRNA | G | 2441 | G | 2442 | * | U | 2428 | C | 2430 | cWW | cWW |
| 6 | IL_5TBW_086 | 5TBW | 0.2339 | 1 | Single bulged U | 1 | LSU rRNA | C | 2237 | G | 2238 | * | C | 2204 | G | 2206 | cWW | cWW |
| 7 | IL_4V88_469 | 4V88 | 0.5391 | 1 | Single bulged U | A6 | SSU rRNA | U | 1656 | G | 1658 | * | U | 1743 | A | 1744 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CUG | 2 |
| GG*UUC | 2 |
| CG*UUG | 1 |
| UG*UUG | 1 |
| UUG*UA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *U | 6 |
| U* | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged U (7)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.15 | Avg 0.32 | Max 0.76
Coloring options: