Motif IL_21676.1 Version IL_21676.1 of this group appears in releases 3.84 to 3.84
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1GID_013 | 1GID | 0.9959 | 4 | B | P4-P6 RNA RIBOZYME DOMAIN | U | 182 | A | 186 | A | 187 | C | 189 | * | G | 134 | U | 135 | A | 136 | cWW | cHW | cWW | |
| 2 | IL_2R8S_005 | 2R8S | 0.9429 | 4 | cWH basepair with bulged bases | R | P4-P6 RNA RIBOZYME DOMAIN | U | 182 | A | 186 | A | 187 | C | 189 | * | G | 134 | U | 135 | A | 136 | cWW | cHW | cWW |
| 3 | IL_5J7L_003 | 5J7L | 0.1625 | 2 | AA | SSU rRNA | C | 47 | U | 49 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | ntSs | cWW | |
| 4 | IL_4LFB_003 | 4LFB | 0.0000 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | ||
| 5 | IL_6CZR_115 | 6CZR | 0.1499 | 2 | 1a | SSU rRNA | C | 48 | U | 50 | A | 51 | G | 53 | * | U | 355 | A | 356 | G | 357 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAUAAGC*GUA | 2 |
| CCUAAG*UAG | 2 |
| CCUAAC*GGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUAAG*U | 2 |
| CUAA*A | 2 |
| CUAA*G | 1 |
Release history
| Release | 3.84 |
|---|---|
| Date | 2024-05-22 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- cWH basepair with bulged bases (1)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.15 | Avg 0.49 | Max 1.00
Coloring options: