Motif IL_21726.1 Version IL_21726.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4PCJ_004 | 4PCJ | 0.2034 | 0 | Basepair outside cWW, intercalation pocket | A | trCUG-3('5) | A | 11 | G | 12 | * | U | 25 | A | 26 | U | 27 | cWW | cWW |
| 2 | IL_1U6B_010 | 1U6B | 0.1118 | 0 | Basepair outside cWW, intercalation pocket | B | 197-MER | A | 150 | G | 151 | * | U | 160 | A | 161 | U | 162 | cWW | cWW |
| 3 | IL_5DCV_005 | 5DCV | 0.0000 | 0 | Basepair outside cWW, intercalation pocket | D | RNA (47-MER) | A | 48 | G | 49 | * | U | 3 | A | 4 | U | 5 | cWW | cWW |
| 4 | IL_5J7L_268 | 5J7L | 0.6841 | 1 | Stack outside cWW | DA | LSU rRNA | U | 847||A | C | 848 | * | G | 930 | U | 932 | A | 933 | cWW | cWW |
| 5 | IL_1NTB_001 | 1NTB | 0.6565 | 0 | B+A | RNA (18-mer) | G | 114 | G | 115 | * | C | 5 | G | 6 | C | 7 | cWW | cWW | |
| 6 | IL_5AJ0_054 | 5AJ0 | 0.8901 | 1 | A2 | LSU rRNA | G | 1343 | G | 1344 | * | C | 1359 | G | 1360 | C | 1362 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAU | 3 |
| UC*GUUA | 1 |
| GG*CGC | 1 |
| GG*CGCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 3 |
| *UU | 1 |
| *G | 1 |
| *GC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Basepair outside cWW, intercalation pocket (3)
- (2)
- Stack outside cWW (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.53 | Max 0.97
Coloring options: