Motif IL_22198.1 Version IL_22198.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3AGV_004 | 3AGV | 0.4466 | 0 | S | RNA (24-mer) | G | 4 | G | 5 | UFT | 6 | G | 7 | CFZ | 8 | UFT | 9 | * | A | 18 | A | 19 | CFZ | 20 | cWW | tSH | tWH | cWW | ||
| 2 | IL_8P9A_423 | 8P9A | 0.0000 | 0 | Other IL (H) | sR | SSU rRNA | G | 985 | G | 986 | G | 987 | A | 988 | U | 989 | C | 990 | * | G | 1014 | U | 1015 | C | 1016 | cWW | cWw | cWW | ||
| 3 | IL_8C3A_441 | 8C3A | 0.1131 | 0 | Other IL (H) | CM | SSU rRNA | G | 970 | G | 971 | G | 972 | A | 973 | U | 974 | C | 975 | * | G | 999 | U | 1000 | C | 1001 | cWW | ntSH | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAUC*GUC | 2 |
| GG(UFT)G(CFZ)(UFT)*AA(CFZ) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAU*U | 2 |
| G(UFT)G(CFZ)*A | 1 |
- Annotations
-
- Other IL (H) (2)
- (1)
- Basepair signature
- cWW-tSH-cWW-L-cWW-L
- Heat map statistics
- Min 0.11 | Avg 0.23 | Max 0.47
Coloring options: