IL_8C3A_441

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22198.1

Basepair signature

cWW-tSH-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8C3A|1|CM|G|970
8C3A|1|CM|G|971
8C3A|1|CM|G|972
8C3A|1|CM|A|973
8C3A|1|CM|U|974
8C3A|1|CM|C|975
*
8C3A|1|CM|G|999
8C3A|1|CM|U|1000
8C3A|1|CM|C|1001

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain AW

60S ribosomal protein L2-B

Chain CK

60S ribosomal protein L43-A

Chain DB

40S ribosomal protein S14-A

Chain DN

40S ribosomal protein S26