#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4break 5 6 71-72-63-64-5
1 IL_6VMY_0016VMY0.89810ACobalamin riboswitchU219C220C221G222*C230A231G232cWWntWHcWW
2 IL_7MLW_0077MLW0.69021FGuanidine-I riboswitchG89A90A91A92*U73G75C76cWWcWWcWW
3 IL_4PHY_0034PHY0.62571A+BRNA (26-MER) + RNA (20-mer)G17A18U19C20*G31A33C34cWWcWwncWW
4 IL_4KR6_0024KR60.00008DRNA (39-MER)C25A26A27G28*U8U16G18cWWncWWcWW
5 IL_2O3V_0032O3V0.39342B+ARNA (23-mer)C30G31C32U33*A15A17G19cWWcWScWW
6 IL_3MEI_0043MEI0.45232B+ARNA (23-mer)C7G8C9C10*G13C15G17cWWcWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCCG*CAG1
GAAA*UCGC1
GAUC*GAAC1
CAAG*UAGUGUCCUUG1
CGCU*AAAAG1
CGCC*GCCUG1
Non-Watson-Crick part of the motif
SequenceCounts
CC*A1
AA*CG1
AU*AA1
AA*AGUGUCCUU1
GC*AAA1
GC*CCU1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Basepair signature
    cWW-L-R-L-cWW
    Heat map statistics
    Min 0.17 | Avg 0.56 | Max 0.99
    Help

    Coloring options:

    IL_6VMY_001:IL_6VMY_001 = 0IL_6VMY_001:IL_7MLW_007 = 0.5335IL_6VMY_001:IL_4PHY_003 = 0.6958IL_6VMY_001:IL_4KR6_002 = 0.8981IL_6VMY_001:IL_2O3V_003 = 0.9878IL_6VMY_001:IL_3MEI_004 = 0.9506IL_7MLW_007:IL_6VMY_001 = 0.5335IL_7MLW_007:IL_7MLW_007 = 0IL_7MLW_007:IL_4PHY_003 = 0.3812IL_7MLW_007:IL_4KR6_002 = 0.6902IL_7MLW_007:IL_2O3V_003 = 0.8757IL_7MLW_007:IL_3MEI_004 = 0.8861IL_4PHY_003:IL_6VMY_001 = 0.6958IL_4PHY_003:IL_7MLW_007 = 0.3812IL_4PHY_003:IL_4PHY_003 = 0IL_4PHY_003:IL_4KR6_002 = 0.6257IL_4PHY_003:IL_2O3V_003 = 0.7512IL_4PHY_003:IL_3MEI_004 = 0.7614IL_4KR6_002:IL_6VMY_001 = 0.8981IL_4KR6_002:IL_7MLW_007 = 0.6902IL_4KR6_002:IL_4PHY_003 = 0.6257IL_4KR6_002:IL_4KR6_002 = 0IL_4KR6_002:IL_2O3V_003 = 0.3934IL_4KR6_002:IL_3MEI_004 = 0.4523IL_2O3V_003:IL_6VMY_001 = 0.9878IL_2O3V_003:IL_7MLW_007 = 0.8757IL_2O3V_003:IL_4PHY_003 = 0.7512IL_2O3V_003:IL_4KR6_002 = 0.3934IL_2O3V_003:IL_2O3V_003 = 0IL_2O3V_003:IL_3MEI_004 = 0.1661IL_3MEI_004:IL_6VMY_001 = 0.9506IL_3MEI_004:IL_7MLW_007 = 0.8861IL_3MEI_004:IL_4PHY_003 = 0.7614IL_3MEI_004:IL_4KR6_002 = 0.4523IL_3MEI_004:IL_2O3V_003 = 0.1661IL_3MEI_004:IL_3MEI_004 = 0IL_6VMY_001IL_7MLW_007IL_4PHY_003IL_4KR6_002IL_2O3V_003IL_3MEI_004Discrepancy0.000.200.400.600.80
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