Motif IL_22491.1 Version IL_22491.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_6VMY_001 | 6VMY | 0.8981 | 0 | A | Cobalamin riboswitch | U | 219 | C | 220 | C | 221 | G | 222 | * | C | 230 | A | 231 | G | 232 | cWW | ntWH | cWW | |
2 | IL_7MLW_007 | 7MLW | 0.6902 | 1 | F | Guanidine-I riboswitch | G | 89 | A | 90 | A | 91 | A | 92 | * | U | 73 | G | 75 | C | 76 | cWW | cWW | cWW | |
3 | IL_4PHY_003 | 4PHY | 0.6257 | 1 | A+B | RNA (26-MER) + RNA (20-mer) | G | 17 | A | 18 | U | 19 | C | 20 | * | G | 31 | A | 33 | C | 34 | cWW | cWw | ncWW | |
4 | IL_4KR6_002 | 4KR6 | 0.0000 | 8 | D | RNA (39-MER) | C | 25 | A | 26 | A | 27 | G | 28 | * | U | 8 | U | 16 | G | 18 | cWW | ncWW | cWW | |
5 | IL_2O3V_003 | 2O3V | 0.3934 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW | |
6 | IL_3MEI_004 | 3MEI | 0.4523 | 2 | B+A | RNA (23-mer) | C | 7 | G | 8 | C | 9 | C | 10 | * | G | 13 | C | 15 | G | 17 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCCG*CAG | 1 |
GAAA*UCGC | 1 |
GAUC*GAAC | 1 |
CAAG*UAGUGUCCUUG | 1 |
CGCU*AAAAG | 1 |
CGCC*GCCUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CC*A | 1 |
AA*CG | 1 |
AU*AA | 1 |
AA*AGUGUCCUU | 1 |
GC*AAA | 1 |
GC*CCU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.56 | Max 0.99
Coloring options: