Motif IL_22551.3 Version IL_22551.3 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8D29_005 | 8D29 | 0.7987 | 1 | F | RNA (34-MER) | C | 21 | C | 22 | C | 23 | U | 25 | * | A | 10 | G | 11 | ncWW | cWW | |
| 2 | IL_8CRE_431 | 8CRE | 0.6652 | 0 | CM | SSU rRNA | G | 803 | U | 804 | U | 805 | A | 806 | * | U | 836 | C | 837 | cWW | cWW | |
| 3 | IL_9DFE_076 | 9DFE | 0.0000 | 0 | 1A | LSU rRNA | G | 1964 | C | 1965 | A | 1966 | C | 1967 | * | G | 1933 | C | 1934 | cWW | cWW | |
| 4 | IL_5J7L_318 | 5J7L | 0.0703 | 0 | Bulged stacked bases | DA | LSU rRNA | G | 1964 | C | 1965 | A | 1966 | C | 1967 | * | G | 1933 | C | 1934 | cWW | cWW |
| 5 | IL_4WF9_076 | 4WF9 | 0.1598 | 0 | Bulged stacked bases | X | LSU rRNA | G | 1991 | C | 1992 | A | 1993 | C | 1994 | * | G | 1960 | C | 1961 | cWW | cWW |
| 6 | IL_7A0S_071 | 7A0S | 0.1537 | 0 | Bulged stacked bases | X | LSU rRNA | G | 1947 | C | 1948 | A | 1949 | C | 1950 | * | G | 1916 | C | 1917 | cWW | cWW |
| 7 | IL_4V9F_070 | 4V9F | 0.1719 | 0 | Bulged stacked bases | 0 | LSU rRNA | G | 2005 | C | 2006 | A | 2007 | U | 2008 | * | G | 1974 | C | 1975 | cWW | cWW |
| 8 | IL_8CRE_094 | 8CRE | 0.2379 | 0 | 1 | LSU rRNA | G | 2285 | C | 2286 | A | 2287 | U | 2288 | * | G | 2254 | C | 2255 | cWW | cWW | |
| 9 | IL_8P9A_317 | 8P9A | 0.2445 | 0 | AR | LSU rRNA | G | 2307 | C | 2308 | A | 2309 | U | 2310 | * | G | 2276 | C | 2277 | cWW | cWW | |
| 10 | IL_397D_001 | 397D | 0.7424 | 1 | Multiple bulged bases | A+B | RNA (15-mer) + RNA (12-mer) | A | 22 | U | 23 | C | 24 | G | 26 | * | C | 39 | U | 40 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAC*GC | 4 |
| GCAU*GC | 3 |
| CCCUU*AG | 1 |
| GUUA*UC | 1 |
| AUCUG*CU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CA* | 7 |
| CCU* | 1 |
| UU* | 1 |
| UCU* | 1 |
- Annotations
-
- (5)
- Bulged stacked bases (4)
- Multiple bulged bases (1)
- Basepair signature
- cWW-L-cWW-L
- Heat map statistics
- Min 0.04 | Avg 0.43 | Max 0.96
Coloring options: