Motif IL_23262.2 Version IL_23262.2 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-5 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3UXR_108 | 3UXR | 0.0000 | 0 | B | 5S ribosomal RNA | G | 23 | G | 24 | A | 25 | A | 26 | C | 27 | C | 28 | * | G | 56 | A | 57 | A | 58 | A | 59 | C | 60 | cWW | tSW | cWW |
| 2 | IL_2ZJR_104 | 2ZJR | 0.9275 | 0 | Y | 5S rRNA | G | 25 | G | 26 | A | 27 | A | 28 | C | 29 | C | 30 | * | G | 58 | A | 59 | A | 60 | A | 61 | C | 62 | cWW | ncWW | |
| 3 | IL_2QBG_002 | 2QBG | 0.9665 | 0 | A | 5S rRNA | G | 23 | G | 24 | U | 25 | C | 26 | C | 27 | C | 28 | * | G | 56 | A | 57 | A | 58 | A | 59 | C | 60 | cWW | tSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAACC*GAAAC | 2 |
| GGUCCC*GAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAC*AAA | 2 |
| GUCC*AAA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_23262.2 | Only in the parent motif |
|---|---|---|---|
| IL_23262.1 Compare | IL_2QBG_002, IL_2ZJR_104 | IL_3UXR_108 | IL_3PYO_099 |
Children motifs
| Child motif | Common motif instances | Only in IL_23262.2 | Only in the child motif |
|---|---|---|---|
| IL_23262.3 Compare | IL_2QBG_002, IL_2ZJR_104 | IL_3UXR_108 | IL_3V2F_108 |
- Annotations
-
- (3)
- Basepair signature
- 11_cWW-tSW----cWW
- Heat map statistics
- Min 0.30 | Avg 0.49 | Max 0.97
Coloring options: