Motif IL_23262.3 Version IL_23262.3 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-5 | 2-10 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_002 | 2QBG | 0.3039 | 0 | A | 5S rRNA | G | 23 | G | 24 | U | 25 | C | 26 | C | 27 | C | 28 | * | G | 56 | A | 57 | A | 58 | A | 59 | C | 60 | cWW | tSW | cWW | ||
| 2 | IL_2ZJR_104 | 2ZJR | 0.0000 | 0 | Y | 5S rRNA | G | 25 | G | 26 | A | 27 | A | 28 | C | 29 | C | 30 | * | G | 58 | A | 59 | A | 60 | A | 61 | C | 62 | cWW | ncWW | |||
| 3 | IL_3V2F_108 | 3V2F | 0.9136 | 0 | B | 5S Ribosomal RNA | G | 23 | G | 24 | A | 25 | A | 26 | C | 27 | C | 28 | * | G | 56 | A | 57 | A | 58 | A | 59 | C | 60 | cWW | tSW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAACC*GAAAC | 2 |
| GGUCCC*GAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAC*AAA | 2 |
| GUCC*AAA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_23262.3 | Only in the parent motif |
|---|---|---|---|
| IL_23262.2 Compare | IL_2QBG_002, IL_2ZJR_104 | IL_3V2F_108 | IL_3UXR_108 |
Children motifs
| Child motif | Common motif instances | Only in IL_23262.3 | Only in the child motif |
|---|---|---|---|
| IL_23262.4 Compare | IL_3V2F_108, IL_2QBG_002 | IL_2ZJR_104 |
- Annotations
- Basepair signature
- cWW-R-R-R-tSW-L-L-cWW
- Heat map statistics
- Min 0.30 | Avg 0.48 | Max 0.95
Coloring options: