Motif IL_23419.1 Version IL_23419.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8VTW_031 | 8VTW | 0.5114 | 1 | Minor groove platform (H) | 1A | LSU rRNA | C | 898 | A | 899 | * | U | 877 | G | 879 | cWW | cWW |
| 2 | IL_8C3A_451 | 8C3A | 0.1339 | 1 | Minor groove platform | CM | SSU rRNA | G | 1163 | G | 1164 | * | C | 1445 | C | 1447 | cWW | cWW |
| 3 | IL_4V88_445 | 4V88 | 0.0000 | 1 | Minor groove platform | A6 | SSU rRNA | G | 1178 | G | 1179 | * | C | 1459 | C | 1461 | cWW | cWW |
| 4 | IL_5M0H_004 | 5M0H | 0.2068 | 2 | Multiple bulged bases | A | ASH1 E3 (42 nt-TL/TLR) | A | 35 | C | 36 | * | G | 8 | U | 11 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*CAC | 2 |
| CA*UAG | 1 |
| AC*GAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 3 |
| *AA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (2)
- Multiple bulged bases (1)
- Minor groove platform (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.28 | Max 0.61
Coloring options: