Motif IL_23544.1 Version IL_23544.1 of this group appears in releases 3.2 to 3.26
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2OEU_002 | 2OEU | 0.7853 | 1 | B+A | RNA (20-mer) | A | 12 | U | 13 | C | 14 | * | G | 5 | U | 6 | A | 7 | U | 9 | cWW | cWW |
| 2 | IL_1HC8_001 | 1HC8 | 0.1480 | 1 | C | LSU rRNA | G | 109 | U | 110 | G | 112 | * | C | 126 | A | 127 | U | 128 | C | 129 | cWW | cWW |
| 3 | IL_1MMS_001 | 1MMS | 0.1011 | 1 | C | 23S RIBOSOMAL RNA | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | U | 1078 | C | 1079 | cWW | cWW |
| 4 | IL_5D8H_002 | 5D8H | 0.0000 | 1 | A | LSU rRNA | G | 1169 | U | 1170 | G | 1172 | * | C | 1186 | A | 1187 | U | 1188 | C | 1189 | cWW | cWW |
| 5 | IL_5J7L_285 | 5J7L | 0.1818 | 1 | DA | LSU rRNA | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | U | 1078 | C | 1079 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUG*CAUC | 3 |
| AUC*GUACU | 1 |
| GUAG*CAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*AU | 3 |
| U*UAC | 1 |
| UA*AU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-R-R-cWW
- Heat map statistics
- Min 0.10 | Avg 0.33 | Max 0.80
Coloring options: