Motif IL_23825.2 Version IL_23825.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-3 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V5O_139 | 4V5O | 0.4169 | 1 | BA | SSU rRNA | U | 1229 | U | 1230 | * | A | 1197 | A | 1198 | G | 1199 | G | 1201 | A | 1202 | cWW | cWW |
| 2 | IL_4V8P_161 | 4V8P | 0.0000 | 1 | D1 | LSU rRNA | A | 121 | U | 122 | * | A | 144 | A | 145 | U | 146 | G | 148 | U | 149 | cWW | cWW |
| 3 | IL_5TBW_007 | 5TBW | 0.1655 | 1 | 1 | LSU rRNA | A | 123 | U | 124 | * | A | 144 | G | 145 | U | 146 | G | 148 | U | 149 | cWW | cWW |
| 4 | IL_4V9F_009 | 4V9F | 0.4376 | 1 | 0 | LSU rRNA | A | 248 | G | 249 | * | C | 260 | A | 261 | A | 262 | G | 264 | U | 265 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UU*AAGGGA | 1 |
| AU*AAUUGU | 1 |
| AU*AGUUGU | 1 |
| AG*CAAUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AGGG | 1 |
| *AUUG | 1 |
| *GUUG | 1 |
| *AAUG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cSH-R-R-cWW
- Heat map statistics
- Min 0.17 | Avg 0.32 | Max 0.54
Coloring options: