IL_4V5O_139

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AAGGGA*UU

Length

8 nucleotides

Bulged bases

4V5O|1|BA|G|1199, 4V5O|1|BA|G|1200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23825.2

Basepair signature

cWW-cSH-R-R-cWW

Number of instances in this motif group

4

Unit IDs

4V5O|1|BA|A|1197
4V5O|1|BA|A|1198
4V5O|1|BA|G|1199
4V5O|1|BA|G|1200
4V5O|1|BA|G|1201
4V5O|1|BA|A|1202
*
4V5O|1|BA|U|1229
4V5O|1|BA|U|1230

Current chains

Chain BA

18S RRNA

Nearby chains

Chain B7

PLECTIN/S10 DOMAIN CONTAINING PROTEIN

Chain B9

RPS31E

Chain BU

RIBOSOMAL PROTEIN L7AE CONTAINING PROTEIN