Motif IL_23992.1 Version IL_23992.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_019 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | G | 517 | G | 518 | A | 521 | A | 522 | A | 523 | U | 524 | C | 525 | * | G | 567 | G | 568 | A | 569 | A | 570 | U | 571 | A | 572 | C | 573 | cWW | tHW | tHW | ntHW | cBW | cWW | |
| 2 | IL_7JNH_001 | 7JNH | 0.6141 | 1 | B | Core double ENE RNA (Xtal construct) from Oryza sativa transposon | G | 73 | G | 74 | U | 75 | U | 76 | U | 77 | U | 78 | C | 79 | * | G | 8 | U | 10 | U | 11 | U | 12 | U | 13 | A | 14 | C | 15 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAAAUC*GGAAUAC | 1 |
| GGUUUUC*GUUUUUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAAAU*GAAUA | 1 |
| GUUUU*UUUUUA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.61 | Avg 0.31 | Max 0.61
Coloring options: