Motif IL_25174.1 Version IL_25174.1 of this group appears in releases 0.6 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_103 | 2ZJR | 0.0000 | 0 | Y | 5S rRNA | C | 19 | A | 20 | C | 21 | * | G | 66 | C | 67 | A | 68 | G | 69 | cWW | cWW | cWW | |
| 2 | IL_3E5C_001 | 3E5C | 0.5243 | 2 | Isolated non-canonical cWW with bulges | A | SMK box (SAM-III) Riboswitch | G | 12 | A | 13 | U | 14 | * | A | 27 | G | 28 | G | 31 | C | 32 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAC*GCAG | 1 |
| GAU*AGAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*CA | 1 |
| A*GAUG | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_25174.1 | Only in the parent motif |
|---|---|---|---|
| IL_05754.1 Compare | IL_3E5C_001 | IL_2ZJR_103 | |
| IL_75870.1 Compare | IL_2ZJR_103 | IL_3E5C_001 | IL_2ZJR_059 |
Children motifs
| Child motif | Common motif instances | Only in IL_25174.1 | Only in the child motif |
|---|---|---|---|
| IL_92267.1 Compare | IL_3E5C_001 | IL_2ZJR_103 | IL_3U5H_096, IL_1S72_072 |
- Annotations
-
- Isolated non-canonical cWW with bulges (1)
- Basepair signature
- cWW-R-cWW-cWW
- Heat map statistics
- Min 0.52 | Avg 0.26 | Max 0.52
Coloring options: