Motif IL_92267.1 Version IL_92267.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_096 | 3U5H | 0.3681 | 0 | 5 | 25S rRNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | cWW | cSH | cWW | |
| 2 | IL_1S72_072 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | G | 2090 | G | 2091 | G | 2092 | G | 2093 | * | U | 2652 | A | 2653 | C | 2654 | cWW | cWW | cSH | cWW | |
| 3 | IL_3E5C_001 | 3E5C | 0.7331 | 2 | Isolated non-canonical cWW pair | A | SMK box (SAM-III) Riboswitch | A | 27 | G | 28 | G | 31 | C | 32 | * | G | 12 | A | 13 | U | 14 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGG*UAC | 1 |
| GGGG*UAC | 1 |
| AGAUGC*GAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG*A | 1 |
| GG*A | 1 |
| GAUG*A | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_92267.1 | Only in the parent motif |
|---|---|---|---|
| IL_27618.2 Compare | IL_3U5H_096, IL_1S72_072 | IL_3E5C_001 | IL_1X8W_009, IL_2ZJR_059, IL_3Q1Q_006, IL_4A1B_089, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093, IL_3NPB_004, IL_3U5H_012 |
| IL_25174.1 Compare | IL_3E5C_001 | IL_3U5H_096, IL_1S72_072 | IL_2ZJR_103 |
Children motifs
| Child motif | Common motif instances | Only in IL_92267.1 | Only in the child motif |
|---|---|---|---|
| IL_31663.1 Compare | IL_3U5H_096, IL_1S72_072 | IL_3E5C_001 | IL_4A1B_089, IL_4IOA_061 |
| IL_35595.1 Compare | IL_3E5C_001 | IL_3U5H_096, IL_1S72_072 | IL_3V2F_085 |
- Annotations
-
- (2)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cWW-cWS-cSH-cWW
- Heat map statistics
- Min 0.37 | Avg 0.42 | Max 0.80
Coloring options: