Motif IL_25495.1 Version IL_25495.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5UNE_010 | 5UNE | 0.0000 | 3 | A+B | RNA (47-MER) | G | 31 | G | 32 | C | 33 | G | 34 | A | 38 | * | U | 10 | G | 11 | G | 12 | G | 13 | C | 14 | cWW | ncWW | ntSH | cWW | |
2 | IL_3IGI_010 | 3IGI | 0.7754 | 0 | A | Group IIC intron | A | 282 | A | 283 | G | 284 | U | 285 | C | 286 | * | G | 267 | A | 268 | G | 269 | G | 270 | U | 271 | cWW | cWW | tSH | tWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGCGGAAA*UGGGC | 1 |
AAGUC*GAGGU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GCGGAA*GGG | 1 |
AGU*AGG | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.78 | Avg 0.39 | Max 0.78
Coloring options: