Motif IL_27393.12 Version IL_27393.12 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5CNR_001 | 5CNR | 0.1764 | 0 | A+B | RNA (16-mer) + RNA (11-mer) | C | 5 | U | 6 | A | 7 | C | 8 | C | 9 | C | 10 | A | 11 | C | 12 | * | G | 40 | G | 41 | cWW | cWW |
| 2 | IL_4PHY_001 | 4PHY | 0.0000 | 0 | A+B | RNA (26-MER) + RNA (20-mer) | C | 5 | U | 6 | C | 7 | C | 8 | C | 9 | C | 10 | A | 11 | C | 12 | * | G | 40 | G | 41 | cWW | cWW |
| 3 | IL_4P97_001 | 4P97 | 0.7801 | 0 | A+B | RNA (16-mer) + RNA (11-mer) | C | 5 | U | 6 | A | 7 | C | 8 | C | 9 | C | 10 | A | 11 | C | 12 | * | G | 40 | G | 41 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUACCCAC*GG | 2 |
| CUCCCCAC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UACCCA* | 2 |
| UCCCCA* | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-L-L-R-L-R
- Heat map statistics
- Min 0.18 | Avg 0.39 | Max 0.80
Coloring options: