RNA 3D Hub //

Motif IL_27635.4 Version IL_27635.4 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 51-52-32-43-4
1 IL_5J7L_2645J7L0.42290Major groove platformDA LSU rRNAG738A739C740*G757C758cWWcSHcWW
2 IL_4WF9_0264WF90.39540Major groove platformX LSU rRNAG783A784C785*G802C803cWWcSHcWW
3 IL_7A0S_0857A0S0.17420Major groove platformX LSU rRNAU2436G2437A2438*U2472G2473cWWntSHcWW
4 IL_4WF9_0914WF90.00000Major groove platformX LSU rRNAU2484U2485A2486*U2520G2521cWWcSHcWW
5 IL_4OQU_0024OQU0.24610Major groove platformA SAM-I-IV-variantC42A43A44*U29G30cWWncSHcWW
6 IL_1S03_0041S030.25980Major groove platformA47-MERC34A35A36*U16G17cWWcSHtSHcWW
7 IL_1S03_0081S030.25520Major groove platformB47-MERC34A35A36*U16G17cWWcSHtSHcWW
8 IL_5J7L_0285J7L0.28350Major groove platformAA SSU rRNAU594A595A596*U644G645cWWcSHntSHcWW
9 IL_1I6U_0011I6U0.27780Major groove platformC16S RRNA FRAGMENTU9A10A11*U28G29cWWcSHntSHcWW
10 IL_7A0S_0737A0S0.29810Major groove platformX LSU rRNAC2033A2034G2035*C2596G2597cWWcSHcWW
11 IL_4WF9_0784WF90.29060Major groove platformX LSU rRNAC2077A2078G2079*C2644G2645cWWcSHcWW
12 IL_8VTW_0778VTW0.24880Major groove platform1A LSU rRNAC2050A2051G2052*C2617G2618cWWcSHcWW
13 IL_5J7L_3205J7L0.22730Major groove platformDA LSU rRNAC2050A2051A2052*U2617G2618cWWcSHtSHcWW
14 IL_8TSV_0018TSV0.27300Major groove platformA+BZika virus stem-loop A (SLA) top stemU6G7C8*G19A20cWWncSHtSHcWW
15 IL_3NKB_0023NKB0.29890Major groove platformBHepatitis delta virus ribozymeG55U56A57*U47C48cWWcSHcWW
16 IL_3OXE_0033OXE0.26230Major groove platformAGlycine riboswitchC68U69C70*G35G36cWWcSHcWW
17 IL_4LFB_0244LFB0.25150Major groove platformA SSU rRNAG594G595C596*G644C645cWWncSHntSHcWW
18 IL_4V9F_0444V9F0.39541Major groove platform0 LSU rRNAA1191A1193A1194*U1205U1206cWWcSHntSHcWW
19 IL_7A0S_0237A0S0.35111Major groove platform; stack outside cWWX LSU rRNAU857G858U860*A944G945cWWcWW
20 IL_5TBW_1025TBW0.40810Major groove platform1 LSU rRNAU2865U2866C2867*G2823G2824cWWncSHcWW
21 IL_7A0S_0847A0S0.37490Major groove platformX LSU rRNAC2475A2476C2477*G2433G2434cWWcSHcWW
22 IL_8VTW_0918VTW0.31280Major groove platform1A LSU rRNAC2496A2497C2498*G2454G2455cWWcSHcWW
23 IL_4V9F_0824V9F0.35570Major groove platform0 LSU rRNAU2531A2532C2533*G2489A2490cWWcSHcWW
24 IL_4WF9_0904WF90.36630Major groove platformX LSU rRNAC2523A2524C2525*G2481G2482cWWcSHcWW
25 IL_7A0S_0827A0S0.39040Major groove platformX LSU rRNAU2380A2381C2382*G2393G2394cWWcSHcWW
26 IL_1XJR_0021XJR0.46550Major groove platformA s2m RNAU37A38C39*G13G14cWWcSHcWW
27 IL_8VTW_0898VTW0.42780Major groove platform1A LSU rRNAU2401C2402C2403*G2414G2415cWWcSHcWW
28 IL_8VTW_0088VTW0.43280Major groove platform1A LSU rRNAU363|||EA363|||FC364*G272|||DG272|||EcWWcWW
29 IL_5Y85_0055Y850.40280Major groove platformD+CDNA/RNA (50-MER)C40G41C42*G9G10cWWcWW
30 IL_4LFB_0284LFB0.48070Major groove platformA SSU rRNAC747C748C749*G657G658cWWcWW
31 IL_1G1X_0051G1X0.47560Major groove platformJ+I16S RIBOSOMAL RNAC747C748C749*G657G658cWWncSHcWW
32 IL_1G1X_0021G1X0.51060Major groove platformE+D16S RIBOSOMAL RNAC747C748C749*G657G658cWWncSHcWW
33 IL_5T5A_0025T5A0.43070Major groove platformADNA/RNA (71-MER)C50G51C52*G10G11cWWncSHcWW
34 IL_6CZR_1406CZR0.51790Major groove platform1a SSU rRNAC731C732C733*G641G642cWWcWW
35 IL_7EOG_0017EOG0.47620Major groove platformAPepper (49-MER)C5A6C7*G44G45cWWcSHcWW
36 IL_7EOM_0017EOM0.45570Major groove platformAPepper (49-MER)C5A6C7*G44G45cWWncSHcWW
37 IL_3SUX_0023SUX0.60780Major groove platformX THF riboswitchU47G48U49*G37A38ncWWcWW
38 IL_6JOO_0016JOO0.95182BGuide RNAG61U64C65*G57C58cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAC*GG5
CAA*UG4
CCC*GG4
CAG*CG3
UAC*GG3
GAC*GC2
UAA*UG2
CGC*GG2
UGA*UG1
UUA*UG1
UGC*GA1
GUA*UC1
CUC*GG1
GGC*GC1
AAAA*UU1
UGUU*AG1
UUC*GG1
UAC*GA1
UCC*GG1
UGU*GA1
GUUUC*GC1
Non-Watson-Crick part of the motif
SequenceCounts
A*20
G*6
C*5
U*4
AA*1
GU*1
UUU*1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (36)
  • (1)
  • Major groove platform; stack outside cWW (1)
    • Basepair signature
    cWW-cSH-cWW
    Heat map statistics
    Min 0.04 | Avg 0.32 | Max 1.00
    Help

    Coloring options:

    Copyright 2026 BGSU RNA group. Page generated in 0.9711 s