RNA 3D Hub //

Motif IL_27844.1 Version IL_27844.1 of this group appears in releases 3.85 to 3.85

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_2ET8_0032ET80.59221Decoding loop relatedA+BRNA (22-mer)G15A17G18*C29A30C31cWWcWW
2 IL_3LOA_0033LOA0.45921Decoding loop with one bulged AB+ARNA (23-mer)G1491A1493G1494*C1407A1408C1409cWWcWW
3 IL_8C3A_4548C3A0.66840Other ILCM SSU rRNAA1219C1220A1221*U1234U1235U1236cWWcWW
4 IL_4V88_4484V880.53270A6 SSU rRNAA1234C1235A1236*U1249U1250U1251cWWcWW
5 IL_3MOJ_0023MOJ0.54480A LSU rRNAA2513U2514C2515*G2569G2570U2571ncWWncWWacWW
6 IL_6CZR_1226CZR0.26700Isolated non-canonical cWW pair1a SSU rRNAG196U197G198*C181C182C183cWWcWWncWW
7 IL_1XJR_0031XJR0.00001Isolated non-canonical cWW pairAs2m RNAG32G34G35*C16A17C18cWWcWWcWW
8 IL_4V88_4554V880.24571Isolated non-canonical cWW pairA6 SSU rRNAC1339A1341C1342*G1383A1384G1385cWWncwWcWW
9 IL_8C3A_4638C3A0.39903CM SSU rRNAA1355G1358C1360*G1336C1337U1338ncWWcWW
10 IL_4M4O_0044M4O0.53180BRNA (59-MER)C39A40C41*G26A27G28cWWcWW
11 IL_4M6D_0134M6D0.55380HaptamerC39A40C41*G26A27G28cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAG*CAC2
ACA*UUU2
CAC*GAG2
AUC*GGU1
GUG*CCC1
GAGG*CAC1
CUAC*GAG1
AUAGUC*GCU1
Non-Watson-Crick part of the motif
SequenceCounts
AA*A2
C*U2
A*A2
U*G1
U*C1
AG*A1
UA*A1
UAGU*C1

Release history

Release3.85
Date2024-06-19
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Isolated non-canonical cWW pair (3)
  • Decoding loop related (1)
  • Decoding loop with one bulged A (1)
  • Other IL (1)
    • Basepair signature
    cWW-L-R-cWW
    Heat map statistics
    Min 0.14 | Avg 0.49 | Max 0.77
    Help

    Coloring options:

    IL_2ET8_003:IL_2ET8_003 = 0IL_2ET8_003:IL_3LOA_003 = 0.2732IL_2ET8_003:IL_8C3A_454 = 0.5089IL_2ET8_003:IL_4V88_448 = 0.5154IL_2ET8_003:IL_3MOJ_002 = 0.6202IL_2ET8_003:IL_6CZR_122 = 0.5776IL_2ET8_003:IL_1XJR_003 = 0.5922IL_2ET8_003:IL_4V88_455 = 0.4033IL_2ET8_003:IL_8C3A_463 = 0.5701IL_2ET8_003:IL_4M4O_004 = 0.5243IL_2ET8_003:IL_4M6D_013 = 0.5916IL_3LOA_003:IL_2ET8_003 = 0.2732IL_3LOA_003:IL_3LOA_003 = 0IL_3LOA_003:IL_8C3A_454 = 0.4916IL_3LOA_003:IL_4V88_448 = 0.4862IL_3LOA_003:IL_3MOJ_002 = 0.6308IL_3LOA_003:IL_6CZR_122 = 0.666IL_3LOA_003:IL_1XJR_003 = 0.4592IL_3LOA_003:IL_4V88_455 = 0.4068IL_3LOA_003:IL_8C3A_463 = 0.6627IL_3LOA_003:IL_4M4O_004 = 0.6124IL_3LOA_003:IL_4M6D_013 = 0.6525IL_8C3A_454:IL_2ET8_003 = 0.5089IL_8C3A_454:IL_3LOA_003 = 0.4916IL_8C3A_454:IL_8C3A_454 = 0IL_8C3A_454:IL_4V88_448 = 0.3333IL_8C3A_454:IL_3MOJ_002 = 0.6187IL_8C3A_454:IL_6CZR_122 = 0.5857IL_8C3A_454:IL_1XJR_003 = 0.6684IL_8C3A_454:IL_4V88_455 = 0.7312IL_8C3A_454:IL_8C3A_463 = 0.7365IL_8C3A_454:IL_4M4O_004 = 0.7359IL_8C3A_454:IL_4M6D_013 = 0.7726IL_4V88_448:IL_2ET8_003 = 0.5154IL_4V88_448:IL_3LOA_003 = 0.4862IL_4V88_448:IL_8C3A_454 = 0.3333IL_4V88_448:IL_4V88_448 = 0IL_4V88_448:IL_3MOJ_002 = 0.3885IL_4V88_448:IL_6CZR_122 = 0.4702IL_4V88_448:IL_1XJR_003 = 0.5327IL_4V88_448:IL_4V88_455 = 0.5367IL_4V88_448:IL_8C3A_463 = 0.639IL_4V88_448:IL_4M4O_004 = 0.6838IL_4V88_448:IL_4M6D_013 = 0.7287IL_3MOJ_002:IL_2ET8_003 = 0.6202IL_3MOJ_002:IL_3LOA_003 = 0.6308IL_3MOJ_002:IL_8C3A_454 = 0.6187IL_3MOJ_002:IL_4V88_448 = 0.3885IL_3MOJ_002:IL_3MOJ_002 = 0IL_3MOJ_002:IL_6CZR_122 = 0.5206IL_3MOJ_002:IL_1XJR_003 = 0.5448IL_3MOJ_002:IL_4V88_455 = 0.6033IL_3MOJ_002:IL_8C3A_463 = 0.7004IL_3MOJ_002:IL_4M4O_004 = 0.741IL_3MOJ_002:IL_4M6D_013 = 0.7587IL_6CZR_122:IL_2ET8_003 = 0.5776IL_6CZR_122:IL_3LOA_003 = 0.666IL_6CZR_122:IL_8C3A_454 = 0.5857IL_6CZR_122:IL_4V88_448 = 0.4702IL_6CZR_122:IL_3MOJ_002 = 0.5206IL_6CZR_122:IL_6CZR_122 = 0IL_6CZR_122:IL_1XJR_003 = 0.267IL_6CZR_122:IL_4V88_455 = 0.3704IL_6CZR_122:IL_8C3A_463 = 0.4453IL_6CZR_122:IL_4M4O_004 = 0.5594IL_6CZR_122:IL_4M6D_013 = 0.5957IL_1XJR_003:IL_2ET8_003 = 0.5922IL_1XJR_003:IL_3LOA_003 = 0.4592IL_1XJR_003:IL_8C3A_454 = 0.6684IL_1XJR_003:IL_4V88_448 = 0.5327IL_1XJR_003:IL_3MOJ_002 = 0.5448IL_1XJR_003:IL_6CZR_122 = 0.267IL_1XJR_003:IL_1XJR_003 = 0IL_1XJR_003:IL_4V88_455 = 0.2457IL_1XJR_003:IL_8C3A_463 = 0.399IL_1XJR_003:IL_4M4O_004 = 0.5318IL_1XJR_003:IL_4M6D_013 = 0.5538IL_4V88_455:IL_2ET8_003 = 0.4033IL_4V88_455:IL_3LOA_003 = 0.4068IL_4V88_455:IL_8C3A_454 = 0.7312IL_4V88_455:IL_4V88_448 = 0.5367IL_4V88_455:IL_3MOJ_002 = 0.6033IL_4V88_455:IL_6CZR_122 = 0.3704IL_4V88_455:IL_1XJR_003 = 0.2457IL_4V88_455:IL_4V88_455 = 0IL_4V88_455:IL_8C3A_463 = 0.2956IL_4V88_455:IL_4M4O_004 = 0.4787IL_4V88_455:IL_4M6D_013 = 0.5044IL_8C3A_463:IL_2ET8_003 = 0.5701IL_8C3A_463:IL_3LOA_003 = 0.6627IL_8C3A_463:IL_8C3A_454 = 0.7365IL_8C3A_463:IL_4V88_448 = 0.639IL_8C3A_463:IL_3MOJ_002 = 0.7004IL_8C3A_463:IL_6CZR_122 = 0.4453IL_8C3A_463:IL_1XJR_003 = 0.399IL_8C3A_463:IL_4V88_455 = 0.2956IL_8C3A_463:IL_8C3A_463 = 0IL_8C3A_463:IL_4M4O_004 = 0.499IL_8C3A_463:IL_4M6D_013 = 0.5361IL_4M4O_004:IL_2ET8_003 = 0.5243IL_4M4O_004:IL_3LOA_003 = 0.6124IL_4M4O_004:IL_8C3A_454 = 0.7359IL_4M4O_004:IL_4V88_448 = 0.6838IL_4M4O_004:IL_3MOJ_002 = 0.741IL_4M4O_004:IL_6CZR_122 = 0.5594IL_4M4O_004:IL_1XJR_003 = 0.5318IL_4M4O_004:IL_4V88_455 = 0.4787IL_4M4O_004:IL_8C3A_463 = 0.499IL_4M4O_004:IL_4M4O_004 = 0IL_4M4O_004:IL_4M6D_013 = 0.1382IL_4M6D_013:IL_2ET8_003 = 0.5916IL_4M6D_013:IL_3LOA_003 = 0.6525IL_4M6D_013:IL_8C3A_454 = 0.7726IL_4M6D_013:IL_4V88_448 = 0.7287IL_4M6D_013:IL_3MOJ_002 = 0.7587IL_4M6D_013:IL_6CZR_122 = 0.5957IL_4M6D_013:IL_1XJR_003 = 0.5538IL_4M6D_013:IL_4V88_455 = 0.5044IL_4M6D_013:IL_8C3A_463 = 0.5361IL_4M6D_013:IL_4M4O_004 = 0.1382IL_4M6D_013:IL_4M6D_013 = 0IL_2ET8_003IL_3LOA_003IL_8C3A_454IL_4V88_448IL_3MOJ_002IL_6CZR_122IL_1XJR_003IL_4V88_455IL_8C3A_463IL_4M4O_004IL_4M6D_013Discrepancy0.000.200.400.60
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