Motif IL_28026.1 Version IL_28026.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-12 | 4-13 | 5-10 | 6-12 | 7-10 | 8-9 | 11-13 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_020 | 5J7L | 0.1191 | 0 | AA | SSU rRNA | U | 409 | G | 410 | A | 411 | A | 412 | G | 413 | A | 414 | A | 415 | G | 416 | * | U | 427 | G | 428 | U | 429 | A | 430 | A | 431 | A | 432 | G | 433 | cWW | tSH | tWH | ncBW | tSS | tHW | tHH | cWW | cWH |
| 2 | IL_4LFB_017 | 4LFB | 0.0000 | 0 | A | SSU rRNA | G | 409 | G | 410 | A | 411 | A | 412 | G | 413 | A | 414 | A | 415 | G | 416 | * | U | 427 | G | 428 | U | 429 | A | 430 | A | 431 | A | 432 | C | 433 | cWW | ntSH | tWH | tSS | tHW | tHH | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGAAG*UGUAAAG | 1 |
| GGAAGAAG*UGUAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAA*GUAAA | 2 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: