Motif IL_28028.1 Version IL_28028.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX6_064 | 1VX6 | 0.0000 | 1 | A | 28S ribosomal RNA | G | 1530 | G | 1531 | U | 1532 | U | 1533 | U | 1534 | * | A | 1569 | U | 1570 | U | 1572 | C | 1573 | C | 1574 | cWW | cWH | cWw | cWW | |
| 2 | IL_3U5F_039 | 3U5F | 0.5632 | 0 | 6 | 18S rRNA | C | 708 | C | 709 | U | 710 | U | 711 | G | 712 | * | C | 726 | U | 727 | U | 728 | G | 729 | G | 730 | cWW | ncWW | cwW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUU*AUCUCC | 1 |
| CCUUG*CUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUU*UCUC | 1 |
| CUU*UUG | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_28028.1 | Only in the parent motif |
|---|---|---|---|
| IL_81398.1 Compare | IL_3U5F_039 | IL_1VX6_064 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-L-cWW-cWW
- Heat map statistics
- Min 0.56 | Avg 0.28 | Max 0.56
Coloring options: