IL_1VX6_064

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUU*AUCUCC

Length

11 nucleotides

Bulged bases

1VX6|1|A|C|1571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28028.1

Basepair signature

cWW-L-R-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1VX6|1|A|G|1530
1VX6|1|A|G|1531
1VX6|1|A|U|1532
1VX6|1|A|U|1533
1VX6|1|A|U|1534
*
1VX6|1|A|A|1569
1VX6|1|A|U|1570
1VX6|1|A|C|1571
1VX6|1|A|U|1572
1VX6|1|A|C|1573
1VX6|1|A|C|1574

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA