Motif IL_28058.1 Version IL_28058.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 1-19 | 1-23 | 2-18 | 4-8 | 4-16 | 5-20 | 6-12 | 7-11 | 7-15 | 8-9 | 8-17 | 9-22 | 10-21 | 13-14 | 16-20 | 20-21 | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NBS_003 | 1NBS | 0.0000 | 2 | A | RNase P class B | C | 184 | A | 185 | C | 186 | A | 187 | G | 188 | U | 189 | G | 190 | A | 191 | C | 192 | G | 193 | A | 195 | G | 196 | U | 197 | * | A | 216 | G | 217 | U | 218 | G | 219 | G | 220 | A | 221 | A | 222 | C | 223 | G | 224 | G | 226 | ntsS | cWW | ntHH | tWH | ntSW | ncSs | ncSH | ntWS | ncWH | ncHW | cWW | ncSH | ||||
| 2 | IL_1NBS_010 | 1NBS | 0.1948 | 2 | B | RNase P class B | C | 184 | A | 185 | C | 186 | A | 187 | G | 188 | U | 189 | G | 190 | A | 191 | C | 192 | G | 193 | A | 195 | G | 196 | U | 197 | * | A | 216 | G | 217 | U | 218 | G | 219 | G | 220 | A | 221 | A | 222 | C | 223 | G | 224 | G | 226 | ntsS | cWW | tHH | ntWH | csS | tSW | cWS | ncSs | ncHW | cSH | tWS | ncWH | ncHW | cWW | tWH | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACAGUGACGAAGU*AGUGGAACGCG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAGUGACGAAG*GUGGAACGC | 2 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_28058.1 | Only in the parent motif |
|---|---|---|---|
| IL_29989.1 Compare | IL_1NBS_010 | IL_1NBS_003 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSS-L-L-cSS-tWH-tSW-cWS-cSS-tWS-cSH-cWH-cHW-cSH-R-R-cWW
- Heat map statistics
- Min 0.19 | Avg 0.10 | Max 0.19
Coloring options: