Motif IL_28059.1 Version IL_28059.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5DO5_001 | 5DO5 | 0.6830 | 0 | A | U | 108||A||2_556 | AF2 | 109||B||2_556 | AF2 | 109||A||2_556 | 2SG | 110||||2_556 | C | 111||||2_556 | * | G | 102 | C | 103 | G | 104 | A | 105 | cWW | cWW | cWW | cWW | cWW | |
| 2 | IL_1U6B_004 | 1U6B | 0.0000 | 0 | B | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | * | G | 119 | A | 120 | A | 121 | G | 122 | cWW | cWW | cWW | |||
| 3 | IL_4V88_466 | 4V88 | 0.7046 | 0 | Non canonical cWW and near pair | A6 | A | 1753 | A | 1754 | A | 1755 | A | 1756||A | G | 1757 | * | C | 1644 | G | 1645 | C | 1646 | U | 1647 | cWW | ntWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| U(AF2)(AF2)(2SG)C*GCGA | 1 |
| CAAGC*GAAG | 1 |
| AAAAG*CGCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (AF2)(AF2)(2SG)*CG | 1 |
| AAG*AA | 1 |
| AAA*GC | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Non canonical cWW and near pair (1)
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.68 | Avg 0.48 | Max 0.77
Coloring options: