Motif IL_28060.2 Version IL_28060.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-6 | 4-8 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_277 | 4V8P | 0.3568 | 1 | Major groove minor groove platform with tHH (H) | D1 | LSU rRNA | U | 3036 | A | 3037 | A | 3038 | U | 3039 | U | 3040 | * | A | 3080 | C | 3082 | A | 3083 | cWW | cWW | ||
| 2 | IL_5TBW_117 | 5TBW | 0.0000 | 1 | Major groove minor groove platform with tHH | 1 | LSU rRNA | U | 3047 | A | 3048 | A | 3049 | U | 3050 | U | 3051 | * | A | 3091 | C | 3093 | A | 3094 | cWW | tHH | cWW | |
| 3 | IL_4WF9_050 | 4WF9 | 0.6432 | 0 | Major groove minor groove platform with tHH | X | LSU rRNA | G | 1356 | G | 1357 | A | 1358 | A | 1359 | G | 1360 | * | C | 1368 | G | 1369 | C | 1370 | cWW | tHH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAUU*ACCA | 2 |
| GGAAG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAU*CC | 2 |
| GAA*G | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove minor groove platform with tHH (2)
- Major groove minor groove platform with tHH (H) (1)
- Basepair signature
- cWW-tHH-L-cWS-R-cWW
- Heat map statistics
- Min 0.36 | Avg 0.38 | Max 0.72
Coloring options: